RNA id: TU1996148



Basic Information


Item Value
RNA id TU1996148
length 316
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G1743100
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45728890 ~ 45729205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCCATACAATAATATAAATCAACCGCAGATGTCATGATTACAACCAATTTTGAGCATTACTGTAACTCACACAATGGGGGCAGCTCCACTTGCCCTCGGGGGCCTTCTCCAGCTCAGGCTCCAGACAGACCAGGTGGTAGGCCCTGGGACAGGTGTCACACAGAATAATCTCCCCTCCCTGCTGGCAGACCTCACAGTAGTCCTGGTGGTCTGTCTCATAACCATCCACCTCCACATCACCCTCACCCAgcactgacagagagaggggtgggggagaaaaTTAGGGAGAATAACAAtgtgagggagatagaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1996147 lncRNA upstream 130 45728500 ~ 45728760 (+) True G1743099
TU1996146 lncRNA upstream 929 45727476 ~ 45727961 (+) True G1743098
TU1996144 lncRNA upstream 3853 45724672 ~ 45725037 (+) True G1743096
TU1996142 lncRNA upstream 5519 45723067 ~ 45723371 (+) False G1743094
TU1996141 lncRNA upstream 5519 45723152 ~ 45723371 (+) True G1743094
TU1996162 lncRNA downstream 56645 45785850 ~ 45793826 (+) True G1743112
TU1996223 lncRNA downstream 162692 45891897 ~ 45928329 (+) True G1743166
TU1996229 lncRNA downstream 193301 45922506 ~ 45967783 (+) True G1743171
TU1996261 lncRNA downstream 199621 45928826 ~ 45929855 (+) False G1743202
TU1996265 lncRNA downstream 199621 45928826 ~ 45929855 (+) False G1743202
XM_021577986.2 mRNA upstream 26228 45688450 ~ 45702662 (+) True LOC110500573
XM_021577985.2 mRNA upstream 42841 45677661 ~ 45686049 (+) True LOC110500572
XM_021577982.2 mRNA upstream 80641 45642861 ~ 45648249 (+) True si:dkey-19b23.7
XM_036957971.1 mRNA upstream 163148 45544516 ~ 45565742 (+) False si:dkey-38p12.3
XM_036957968.1 mRNA upstream 211657 45485247 ~ 45517233 (+) False LOC110500870
XM_021577990.2 mRNA downstream 15405 45744610 ~ 45755368 (+) False LOC110500577
XM_021577988.2 mRNA downstream 15412 45744617 ~ 45755368 (+) False LOC110500577
XM_021577989.2 mRNA downstream 15423 45744628 ~ 45755368 (+) False LOC110500577
XM_021577991.2 mRNA downstream 15423 45744628 ~ 45755368 (+) True LOC110500577
XM_021577999.2 mRNA downstream 118981 45848186 ~ 45850007 (+) True cnpy4
TU1996124 other upstream 18940 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 89148 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 173301 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 234938 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 280203 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 1434699 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2365562 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2595895 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 3248121 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3716634 49445839 ~ 49446626 (+) True G1747814

Expression Profile