RNA id: TU1996162


Basic Information

Item Value
RNA id TU1996162
length 4262
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G1743112
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45785850 ~ 45793826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAACTTTTTTATTGGTACATTAGGAGAGAAGTTTAAGTTTAAAAGCCCTAAAAAGGCCAAGCGCCTCATAGTACAAAGTAGACCAACAAAATCCAATGTATCACATGGaataTGCACGGGCTTCATGACAGCATATGGTTCTTGAACACTTAAAGAGATTGTCAGCAGATGTGTCTTCCTGCAagagttacatttaaaaaaaggtcaaggccatcagactgtcaaacagccatcactagcacattagaggctgctgcctataggcatagactaggaatcactggccactttaaggaatggaacactagtcactttaataatgtttacatatccggcattactcatctcatatgtaaatactgtattctatactattctatggtatcttagtcacttaataatatttacatatcttgcattactcatctaatatgtatatactgtattctatactattctatggtatcttagtcatttaatgtttacatatcttgcattactcatctaatatgtatatactgtattctatactattctatggtatagtcatttaatgtttacatatctgccattactcatctcatgtgtatatactgttttctatactattttatggtatctcattcacttaataatattcacatatcttgcattactcatctcatatgtatatactgttttctatactattctatggtatcttagtaatttaatgtttacatatctggcattactcatctcatatgtatatactgtgttctatacttttctactgtatcttagtccgttccgctctggcatcgctcgtccatatgtataaagtcttaattcattcctacttagatttgggtatatgttgtataattagttagatattacttgttagatattaccgaactgtcggagctagaagcacaagcatctcgctacacccgcagtaacatctgctaatcacgtgtatgtgaccaatacattttatttgatttttgatttgagagaaaggcaggttgaggttgccaggATTAGAGTAGTACTGAAGGTGTAATATGCTCAggcagtgaagagagtagtagaggaagatgggtccaggCTGCCAGCCTGGTCTAGATAAGAGAAATGTATGAATAGGGAGGCTGTGactggcctcacactccagtacagtaagTAGGTGCCGTATGCACCTCTTGGTTGCGATCAGCCAATGGGAGCCTGTAGGGTAGGTAGGAAAGACGTTTCAACTTATGATATCTACCAGTATATGCTAACTAAGGGaacaatgggtatgcaaaccaggtattgAAAACGTTTAGTCCGAAGTCTTGTTTGAATCTTTGCAAAGCGCAATTCAGTCATCAGGCGCTGTTTGAGTAAACAAGGCTTTACCAAAAGAACCTTCACAATTAAATGACTCCAAAGTAGGCCTACCTGACAGAATGATATCATTAGGATTTTTATCAATCGGGAGGGCATTCTTTTTTTTAGCGAACTCTGCCATCACATTTACAATGTaggtctacagttgaagtcaaaagtttccatacaccttagccaaatacatttgaactcagtttttcacaattcctgacatttaatccaagttaaaattcctgtcttaggtcagttaggatcaccactttattgcaagaatgtgaaatgtcagaatactaGTAGAGagcatgatttatttcagcttttatttctttcatcacattcccagtgggtcagaagttaacatatgctcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaaagttccGGGTAAccgtccacaagcttcccacaataagttggatgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgcttgcacacaccttttcagttcagcccacacattttctataggattgaggtcagaactttgtgatggccactccaataccttgactttgttgtcctcaagccattttgccacaactttggaagtttgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaactgactgatatcttgagatgttgcttcgatatatccacataattttccatcatcatgatgccatctattttgtgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgttgccacccccgtgcttcacggttgggatggtgttcttgcaagcctccccctttttcctccaaacggttctatttttgtttcatcagaccagtggacatttcctaaaaaagtacggtctttgtccccatgtgcagttgcaaaccgtagtatggcttttttatggcggttttgaagcagtggcatcttccttgctgagtggcctttcaggttatgtcaatataggactagttttactgtggatatagatacagacgaagcggtcttctggtcaggctccttagacgggcacatcgcgcaccgctcccgagcatactactcgccaatgtccagtctcttgacagcAAGggagatgaaatccgagcaagggtagcattccagagagacataagagactgtaacgttctttgcttcacggaaacatggcttaCTCGAGACACGCTTTCGGattcggtacagccagctggtttcttcacgcatcacgccgacagaaacaagcatctttctggtaagaagaagggcgggggtatgccttatgattaacgagacgtggtgtgatcataacaacatacaggaactcaagtccttctgttcacctgacttagaattcctcacaatcaagtgttgaccgcattatctaccaagagaattctcttcgttTATAATCACAGCCACATATATTCCCCCCCaggcagacacatcgatggccctgaacgaacttcatttgactctatgtaaactggaaaccacatatcctgaggctgcattcattgtagctggggattttaacaaggctaatctgaaaacaagactccctaaattctatcagcatatcgattgtgcaaccagggctggtaaaaccctggatcattgttattctaacttccgcgatgcatataaggaagcttctaaagccatgacataattatatggaattttccaagctgtttaaaagcatagtcaatttagtgtatgttaacatctgacccactggacttgtgatacagtgaattataagttaaataatctgtctgtaaacaattgttggaaaaatgaattgtgtcatgcacaaagtagatgtctgaaccgacttgccaaaactattgtttgtgaacaagaaatttgtggagtggttgaaaaatgaggttttaatgactccaacctaagtgtatgtaaacttctgacttgtaCGTTGTACACTAGGCTACAGAAACCCCACTAGCCAAAAGGTATCTTGCATGGCGTGAAACTGAATTAAATGGCAACTACACCTCCCCAAATATTGATTTTTAGATTTTTTCCAGACCCCAAAATTGTCTCCTgatatggtaaaaaaaaaaaaaattgcaattgAGAGTGAATACCTGGAAAAACTATGGGAAAATTTTTTTCACACAGTGTGACTTTCCTTCACCGGGCAGAACATTTGGGAAAATGATTGTATACCCACTTCTCTAGgcaccaccaacacacacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagaaagaaagaaagaaagaaagaaagaaagaaagaacagcAAAACCATGTTAGTGAGGTTTCTGTGCCATGGAGTTCTCAAGCGTCCACACCATACGATCTCTTATGTGAATGGAGTAGATGGTGTCCCCTAAATGCCATTTTCACACAGGCAAGGAAGATGAAGAACACTCCACAGAAGAACACCACAGCCATACAGATGCTGCCCAGGCTGTTGAACCAGAAAGCAAACAGGTATATCTTCCTCTGACAGTACTTCTCTCCACCATTCGTGTCATAGTTCGGGGGATATATGGAGTACACCCACTCACTCCCTTAAGATACAGAGAAAAACAAGGAATAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996148 lncRNA upstream 56645 45728890 ~ 45729205 (+) True G1743100
TU1996147 lncRNA upstream 57090 45728500 ~ 45728760 (+) True G1743099
TU1996146 lncRNA upstream 57889 45727476 ~ 45727961 (+) True G1743098
TU1996144 lncRNA upstream 60813 45724672 ~ 45725037 (+) True G1743096
TU1996142 lncRNA upstream 62479 45723067 ~ 45723371 (+) False G1743094
TU1996223 lncRNA downstream 98071 45891897 ~ 45928329 (+) True G1743166
TU1996229 lncRNA downstream 128680 45922506 ~ 45967783 (+) True G1743171
TU1996261 lncRNA downstream 135000 45928826 ~ 45929855 (+) False G1743202
TU1996265 lncRNA downstream 135000 45928826 ~ 45929855 (+) False G1743202
TU1996274 lncRNA downstream 135000 45928826 ~ 45930122 (+) False G1743202
XM_021577990.2 mRNA upstream 30482 45744610 ~ 45755368 (+) False LOC110500577
XM_021577988.2 mRNA upstream 30482 45744617 ~ 45755368 (+) False LOC110500577
XM_021577989.2 mRNA upstream 30482 45744628 ~ 45755368 (+) False LOC110500577
XM_021577991.2 mRNA upstream 30482 45744628 ~ 45755368 (+) True LOC110500577
XM_021577986.2 mRNA upstream 83188 45688450 ~ 45702662 (+) True LOC110500573
XM_021577999.2 mRNA downstream 54360 45848186 ~ 45850007 (+) True cnpy4
XM_036957984.1 mRNA downstream 76061 45869887 ~ 45888657 (+) False LOC110500584
XM_036957985.1 mRNA downstream 76061 45869887 ~ 45888657 (+) False LOC110500584
XM_036957986.1 mRNA downstream 76061 45869887 ~ 45888657 (+) True LOC110500584
XM_021578003.2 mRNA downstream 148331 45942157 ~ 45944870 (+) True LOC110500588
TU1996124 other upstream 75900 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 146108 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 230261 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 291898 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 337163 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 1370078 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2300941 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2531274 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 3183500 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3652013 49445839 ~ 49446626 (+) True G1747814

Expression Profile