RNA id: TU1996223


Basic Information

Item Value
RNA id TU1996223
length 3072
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1743166
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45891897 ~ 45928329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCCTCTGTCAACCaggcctcctctctctgccccccaacCCAACCCTCTGTCAACcaggccccctctctctctacagctagCTACAGGGGGTTACAAATACAGCACAGCTCACTTTCAGTGGCATATATTTGTATACTGTTACTGTACAACCCAGTTATATCCTTTGACTATAACAAAGTGACACACACAGGTGTTGTCCATTCATTCTGGGTTAATGCATGACATACTTTCGCCTTTGCTCTGTCTAACCACCTCTACCTATCCTTAGCCTTGCCTATAGTACATTTGACCTCTCACCCTTCCACCCTAAAGATATTATATAGTCCTGTCTGTCCTCTGAAGCCTTTGGTCATGGATGTCTGTTCCCCTCTACTATTCAGACACAGCTTCTCCAGGCTCCAGCTCCATTGTGCTATGATGTGTTTGTAGTTTGCAATGGGAACCTTATTTTGGCAGTCGCAGGGTTAGTGGGGACAGGTGATTTACGACACCGGGGGCCATAGCGAGGGTTCCGCGTTTCTTTGTTTCCAGGCGCGGTCTGGACGTTGTTatggcaggcaggcacacacacacacacatctgacacCATGCAATGGGCTTCCCGAAACTCTCAGAGTCTGTGGGAATGTGTggtgggagaaggaggagaaagggtCGGGGGGGCCCGGGGTAGGGATAGGTGGGATTAGGGATCAAAAGGCTGAGGGGGAGAGGTAACATTAGCCTACCCTGTCCAGGTGGTGTGGGAGTGGGGCCTCaaaaggacccccccccccaatagggGTGGGTGCAGTAGTGatggtgtcaaatcaaatcaaacctgaTTTGCCACATGTGTCGAATACAACAcctgtagactttaccgtgaaatgcttacttacaagcccttaaccaacagtgcagttcaagaagaagaaaatatttaccaagtagactaaaccAAAAACTAATAagacaataacgaggctatatacagggggcaccggcaccgagtcagtgtgcaggggtacaggctagttgtgtacatgtaggtgagggtgaagtgactatgcataggtaaaaaacaaacagcgagtagcagcagtgtacaagagggGGGGTGTCAATAAAAATTGTCCTGTGgcaatttttatgaattgttaaGCAGTCTAGTggcttgggtgtgtgtgtgcgtatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgaactccgTCTAGTTGTATTTGAACCATAACTGATGGGATTTCAAGCCAGTGAGGTGACCCCCAACCTTTTTACAACATCTGCACTgtgtgacacacagacacaccccaaTCCCAACAACCCACCCCCAAATCCACTGTCTCCTTACACAATCCCATGTGCATATGCTGTCCATTTCTCTACCTCCTAGGACCTAGTACCTCATATAAAGTAAAGGACAGGTCTGTCAACCCAAATAAATAAATTTAATCTTTacagtgtctgtagtttacaagtcttcttttttttctccctttagTTTCTGTTGGCCAACCGTGAGGTTTCCAGGAGTTGGTTCACTTGCTGGTTGTCTAATCCTCCTCAGTGGTCGCTGTGTCATGTGGTAAGCAGGTCTGGGCTGCTGGCAGGTTGTCACACTGCAGGTAGGAATACACAACCTGGACCTGTACACACAGAGGGTCAGAGAAACATAATCTCTCAACGACTGTTTTTGAAATCAATGTACTCTTTCAACAAAATAAAATTATGCTTTATCCTTTCCTTAATATCAGGTAATCACTGATTTGACATTACTCGGTTAGTTAAAGCCATAGGAGAAAAGAAGGGAGGTAGGATGCATTGTCAAAGTACAATGAGTGTACAAGACATTAAggacatcttcctaatattgagttgtaccccctttttgccctcagaacagcctcaattcggcggtgggcgtggactctacaaggtgtcgaaagcgttccacaaggatactggcccatgttgactccaatgcttcccacagttgtgtcaagttgactggatatccattgggtggtggactattcttgatacacacgggaaactgttgagcgtgaaaaacccagcagagttgcagttcttgacacaaactggtgagCCTGGGACCTACTACcacaccccattcaaaggcacttaaatattctgtcttgcccattcaccctctgaatggcacacatacacaatccatgtctccattgtctcagggcttaaaaatccttctttagtctgtctcctctccttcaactacactgatttgaagtggatttaacaagtgacatcaataagggatcatagctttcccctGTATTCACCTGGacagtgtatgtcatggaaagagcaggtgttctttcAGTGTATTAGAACAAAGGCTGTATCGTCACTATATTGTATTATAAAGGTAATCATTATTATTTCTCCACAGAGGCCCAGTTGAAATGCTATGACCAACCTGCACCACCACCTCCTGAGAAATGTCCACTGGCGGGCTGCTCTGCCCCAGAACAGCCACAGGGGGGCGCAGTAGACTGGGACCAAACACAGTGGCCAGGTTCATTAGAGGCATCTTGTTCACATCCTGTCTATCTGACACTCTGGAGAACGTGTGAGAGtatgatgtcatttacaaagaTACACGTAAGGATATGATGTCTTTGGCAAAAATACATGTGGGAAATACAATGGTACGCAATATAAGGTCAGCATTACATGGATATGATGTTTGTTTAATATTGTGATAaatgtgtctgctaaatgaccgaATGTAAATAGTAACATGTAATATGTTAATAGTATCATGTTTTTAGTAACATACTTAGTGCAAACAAGTATTGACAAGAGGTGAGAGAGACCGTttgaggtggtggaggaggaacagGAAGGTGTTTTGGTTGACGGAGGGACAGAACTGGAGCAGAGACAACATGGACACACTCCTGGAGCTCAGGTCTGGGATGTCTAACAGAGAGAAACAACACAGGTATGAGTGGAgaattgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996162 lncRNA upstream 98071 45785850 ~ 45793826 (+) True G1743112
TU1996148 lncRNA upstream 162692 45728890 ~ 45729205 (+) True G1743100
TU1996147 lncRNA upstream 163137 45728500 ~ 45728760 (+) True G1743099
TU1996146 lncRNA upstream 163936 45727476 ~ 45727961 (+) True G1743098
TU1996144 lncRNA upstream 166860 45724672 ~ 45725037 (+) True G1743096
TU1996261 lncRNA downstream 497 45928826 ~ 45929855 (+) False G1743202
TU1996265 lncRNA downstream 497 45928826 ~ 45929855 (+) False G1743202
TU1996274 lncRNA downstream 497 45928826 ~ 45930122 (+) False G1743202
TU1996276 lncRNA downstream 497 45928826 ~ 45929855 (+) False G1743202
TU1996263 lncRNA downstream 574 45928903 ~ 45929855 (+) False G1743202
XM_036957984.1 mRNA upstream 3240 45869887 ~ 45888657 (+) False LOC110500584
XM_036957985.1 mRNA upstream 3240 45869887 ~ 45888657 (+) False LOC110500584
XM_036957986.1 mRNA upstream 3240 45869887 ~ 45888657 (+) True LOC110500584
XM_021577999.2 mRNA upstream 41890 45848186 ~ 45850007 (+) True cnpy4
XM_021577990.2 mRNA upstream 136529 45744610 ~ 45755368 (+) False LOC110500577
XM_021578003.2 mRNA downstream 13828 45942157 ~ 45944870 (+) True LOC110500588
XM_021578009.2 mRNA downstream 88093 46016422 ~ 46020567 (+) False LOC110500591
XM_021578013.2 mRNA downstream 223112 46151441 ~ 46172393 (+) False LOC110500595
XM_021578034.2 mRNA downstream 273502 46201831 ~ 46207380 (+) False LOC110500598
XM_021578021.2 mRNA downstream 273509 46201838 ~ 46210557 (+) False LOC110500598
TU1996124 other upstream 181947 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 252155 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 336308 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 397945 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 443210 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 1235575 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2166438 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2396771 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 3048997 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3517510 49445839 ~ 49446626 (+) True G1747814

Expression Profile