RNA id: TU1997338


Basic Information

Item Value
RNA id TU1997338
length 309
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1744182
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46574329 ~ 46574637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagacacgtgaagctatacaaatgaGTGCACAAAGACAACTTACTGTAGAAaagaacccacaaacacaaaagggaaaatggctacctaaatttgatccccaatcagagacaacgataaacagctgcctctgattgggaaccatatcaggccaccatagacatacaaatacctagacctacaaagcccctagacatacaaaacccctagacaatacaaaaactagcatacccaccctcgtcacaccctgacctaaccaaaatataaagaaaacagagatatctaaggtcagagcgtgacacaAGGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1997086 lncRNA upstream 10526 46482086 ~ 46563803 (+) True G1743935
TU1996946 lncRNA upstream 269352 46304416 ~ 46304977 (+) True G1743799
TU1996761 lncRNA upstream 363923 46207014 ~ 46210406 (+) True LOC110500598
TU1996798 lncRNA upstream 375622 46198499 ~ 46198707 (+) True G1743660
TU1996790 lncRNA upstream 382020 46191215 ~ 46192309 (+) True G1743654
TU1997384 lncRNA downstream 46172 46620809 ~ 46621725 (+) True G1744226
TU1997509 lncRNA downstream 120056 46694693 ~ 46694907 (+) True G1744346
TU1997580 lncRNA downstream 194923 46769560 ~ 46770064 (+) True G1744417
TU1997624 lncRNA downstream 260167 46834804 ~ 46860989 (+) True G1744460
TU1997764 lncRNA downstream 489686 47064323 ~ 47113062 (+) True LOC110500876
XM_036958002.1 mRNA upstream 307407 46253219 ~ 46266922 (+) False LOC110500597
XM_036958011.1 mRNA downstream 459465 47034102 ~ 47113062 (+) False LOC110500876
XM_036958012.1 mRNA downstream 463705 47038342 ~ 47113062 (+) False LOC110500876
XM_036958013.1 mRNA downstream 463705 47038342 ~ 47113062 (+) False LOC110500876
XM_036958010.1 mRNA downstream 463706 47038343 ~ 47113062 (+) False LOC110500876
XM_036958014.1 mRNA downstream 463706 47038343 ~ 47113062 (+) False LOC110500876
TU1996124 other upstream 864379 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 934587 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 1018740 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 1080377 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 1125642 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 589267 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 1520130 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 1750463 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 2402689 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 2871202 49445839 ~ 49446626 (+) True G1747814

Expression Profile