RNA id: TU1997842


Basic Information

Item Value
RNA id TU1997842
length 2047
RNA type TUCP
GC content 0.48
exon number 4
gene id G1744645
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 47163904 ~ 47236823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAACCTTTTATTTTGTTTAATCACCAAATATTGTCAATGGAATTACAAATAAGTTCAATTTTGACCGAAATATGTTTACAAATTTACAGAAAACCATCGTTATACTCAGAATCTGTAGGTATACAGGTCAAGGCACTCCGTAAAGTAGAATGAGTGATGCAGTCAATAAGATTCCATATCATGTACTACAGCAGTCAGCAGTGGTGGTAAAACTTGGCAATGGGAGGACCGCAGTGTTCAGGTTTTTGTTACAGACTACATTCAACCCACACTGCATTGGCAACATTTGGCCACTCCCGGAATACAGTTTGTGATGCATATTCTACGGCACTTTAAACTCAATTTAAAATTATGAAAACATAACTGCTAACAATACAAAAGTTTGACCATATGTGACGCTCAGCTAAGCCTTGGTCATGATCATTAGGCACGAAACAGGAGAAAATTGACAGAAACAGGGATGGACTCATGTTGCGCAAAAAGCGTGCCCTAACGAACATAACCCTGTAGTTTCACGTACAGCTCAGACCACGGATTGGCCTTTGTCGTCGTCGTAGCGTTGGTACTGTTCTCCCAGCAGGGGCTGGCGGCCCTCCAGTTTGCTGTAAGAGTGGGAGCGCACGGCACATGTGGTGGCAGCAAAGATTACAGCGACGACGACCAGGGCCGCCACGATGGCAATGGTGATGATCTCAGTCAAAGTTAAAGGAGCAGCCAAGGTTCTCTGGGGCTGTAAGAAACATCTCAGCGTTGGTCACTGGAGGCCAGAAGGGAACCATGTTGTACCCCCTGTTGTGACCAATGGGGGCATTCTCTGAAGGATAGACTGCCAAATCTGCAAAATGTATCCGTTAAGAGTCAGCATATGAACATGTGCCGCTGATGTACAAAGAAAAAATCCTGCCAGAGATAAACAAAGGGTGCATAGTAATCGTGTAATTGTTGTATAATTACCATTTTACCATGTAATTTAGAAACGGCCTGAACCGCATAGTCAAGTACATAGAAGAACATTGTATCTTCAGACAAGCAAGCACTTACAAAGCCAATACATGAAGACAACAGATCAGGTATTGAACATGAGATTGACAGGAGGATGGGATCCGTTACCAGGGGCGTGCCTCCTGAGCCACTCGTCAAAGATGGCATCCGTGAAAGTGTGGAGAAGTACGAAGATGGGGTCGTTGGGCGAGAGGTGGGTCTGTCCCCCTGTCCCGTTCAGAAACAGGTGGGCCAGGTTGTGAAGGCTCCGTACCACTGGGTCGTAGTTTCCCTGGGGGGCACTATAGCCTGTGCACACAACACAGGTAGCTTGTGGATTAAATACAGGAAACTGTGTGTAGTGGATGTGAATCTCGCCAGTAGCATGTTGGCAGGAGTACACCAGTGAAATGGGTGTTTTCACACCTTCCCTAAGACCTAAATCTCTCAGAGTGTCTAGACTCTTGCTCTAAGACAGTTGGCTTTGAGTTGCGTGTGTTATCGTGTGCAGAAGTTTGTTGGTTCACACCCTGCTCGGGACAGAACAGAATGTACTCtgttgcgtgtgtgcatgcgtgcgtgtgtttcGATGTGTATCATCATGCACAACAACCCTCAACGTTCAGTGTGTGTGAGCCTATGTACACTACAGGAAGTGTAGTGATATCGTGTAGACCAGCAATAGCCACTCACCCTCGATGGTGTTCCTGAAGCTCTCTGAAGAGGTGGAGTAGTAGGGAGGGGTGTCAAAGGTGTTCACCTGCAGGCAGTCTGCCACATCCTGGGGCTCAGGGAGACGCTGCACCATGGGGCGGGCCACGTTTCCAGCTGGGTTTCTCCTGATGGGGGTGGTCTCAGTaTGTTGCAGATGGTCCCCAGTGTATCATAGTCCCCCACACTCTCACAGATCACCCTCCAGTTGGAGAAGATGGAGTTGGTGCTGATGGAATTCATATCGAGGTTGCTCCTCGCTCCCAATAGGTCATCTGTGCAGATGTCACAGGTGCTTCCACCAACGGCAAAGTTCCAGTAGGGCAGGGCAAAGGACGGGTCTTGCAGCATAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1997764 lncRNA upstream 50842 47064323 ~ 47113062 (+) True LOC110500876
TU1997624 lncRNA upstream 302915 46834804 ~ 46860989 (+) True G1744460
TU1997580 lncRNA upstream 393840 46769560 ~ 46770064 (+) True G1744417
TU1997509 lncRNA upstream 468997 46694693 ~ 46694907 (+) True G1744346
TU1997384 lncRNA upstream 542179 46620809 ~ 46621725 (+) True G1744226
TU1998181 lncRNA downstream 462974 47630628 ~ 47631885 (+) False G1744968
TU1998182 lncRNA downstream 462974 47630628 ~ 47631885 (+) True G1744968
TU1998184 lncRNA downstream 463950 47631604 ~ 47632823 (+) True G1744969
TU1998314 lncRNA downstream 657425 47825079 ~ 47826140 (+) True G1745093
TU1997994 lncRNA downstream 792929 47960583 ~ 47961550 (+) True G1744793
XM_036958011.1 mRNA upstream 50842 47034102 ~ 47113062 (+) False LOC110500876
XM_036958012.1 mRNA upstream 50842 47038342 ~ 47113062 (+) False LOC110500876
XM_036958013.1 mRNA upstream 50842 47038342 ~ 47113062 (+) False LOC110500876
XM_036958010.1 mRNA upstream 50842 47038343 ~ 47113062 (+) False LOC110500876
XM_036958014.1 mRNA upstream 50842 47038343 ~ 47113062 (+) False LOC110500876
XM_036958029.1 mRNA downstream 201010 47368664 ~ 47958017 (+) False LOC110500605
XM_036958022.1 mRNA downstream 201011 47368665 ~ 47958017 (+) False LOC110500605
XM_036958028.1 mRNA downstream 201011 47368665 ~ 47958017 (+) False LOC110500605
XM_036958032.1 mRNA downstream 201011 47368665 ~ 47958017 (+) False LOC110500605
XM_036958035.1 mRNA downstream 201011 47368665 ~ 47958017 (+) False LOC110500605
TU1996124 other upstream 1453954 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 1524162 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 1608315 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 1669952 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 1715217 45444527 ~ 45448687 (+) True fcer1g
TU1999487 other downstream 927113 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 1157446 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 1809672 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 2278185 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 2438499 49606153 ~ 49609580 (+) False LOC110500625

Expression Profile