RNA id: TCONS_00052446


Basic Information

Item Value
RNA id TCONS_00052446
length 491
lncRNA type sense_over
GC content 0.50
exon number 1
gene id XLOC_026173
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12202982 ~ 12227359 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGAAGCCACAGAGGAGAGCCAGAGCTGGAGAGAAGAGGGGAAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTCAGGAAAACCGAGAAAGAAGTCATAGGGGGCTTGTGCAGGTACGTAAAAACCCCAAAAACATTGCCTTGACGTTCACATGTGTGCGATTTGTCTTTAATCGCGCGccaacagcagcagcaacagcactACTACTAGAGTAACATGCGTGCAcgatttctgtgttattgtgTACATGCGCCTCTCCAATGCTTCAACACAGCGCCTAACCCACGCGAGACTCGATTTTCTAACTCCCATTCACCTCTTAGGGGTGTATAAAAGCCCACCAGGCTGTCAGGTCACTGTTAGCGATGAAATATCTCCGCGAAATCGATGCATTTTGTGTCTAACAAACACAAACCACGTggttgcgcgcacacacacacggcacGCTGCTCACCTCGCGCGCGCGAT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05205 Proteoglycans in cancer
ko03000 Transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052964 lncRNA downstream 112540 12111780 ~ 12113782 (-) True XLOC_026171
TCONS_00052445 lncRNA downstream 114223 12111160 ~ 12112099 (-) False XLOC_026171
TCONS_00052444 lncRNA downstream 508473 11703909 ~ 11717849 (-) True XLOC_026166
TCONS_00052963 lncRNA downstream 645602 11576654 ~ 11580720 (-) True XLOC_026164
TCONS_00052962 lncRNA downstream 716270 11491443 ~ 11510052 (-) True XLOC_026163
TCONS_00052965 lncRNA upstream 128720 12355532 ~ 12358516 (-) True XLOC_026175
TCONS_00052966 lncRNA upstream 602384 12829196 ~ 12849611 (-) True XLOC_026177
TCONS_00052447 lncRNA upstream 904265 13131077 ~ 13131324 (-) True XLOC_026182
TCONS_00052967 lncRNA upstream 1121406 13348218 ~ 13361083 (-) False XLOC_026183
TCONS_00052448 lncRNA upstream 1128630 13355442 ~ 13358850 (-) True XLOC_026183
TCONS_00051082 mRNA downstream 39077 12128117 ~ 12187245 (-) False XLOC_026172
TCONS_00051081 mRNA downstream 39077 12128117 ~ 12187245 (-) True XLOC_026172
TCONS_00051080 mRNA downstream 199581 11977271 ~ 12026741 (-) True XLOC_026170
TCONS_00051079 mRNA downstream 253806 11960673 ~ 11972516 (-) True XLOC_026169
TCONS_00051078 mRNA downstream 256502 11958592 ~ 11969820 (-) False XLOC_026169
TCONS_00051084 mRNA upstream 118468 12345280 ~ 12352793 (-) True XLOC_026174
TCONS_00051085 mRNA upstream 133894 12360706 ~ 12381272 (-) False XLOC_026176
TCONS_00051086 mRNA upstream 133895 12360707 ~ 12381271 (-) True XLOC_026176
TCONS_00051087 mRNA upstream 657305 12884117 ~ 12890779 (-) False XLOC_026178
TCONS_00051088 mRNA upstream 657311 12884123 ~ 12890670 (-) True XLOC_026178
TCONS_00051073 other downstream 825022 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051071 other downstream 863939 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051051 other downstream 1677845 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051047 other downstream 2013102 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 2039171 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051092 other upstream 698790 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 718832 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051114 other upstream 2661240 14888052 ~ 14888168 (-) True XLOC_026205
TCONS_00051145 other upstream 3409134 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051149 other upstream 3428779 15655591 ~ 15659607 (-) True XLOC_026223

Expression Profile

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