Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00052965 |
| length | 2094 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 2 |
| gene id | XLOC_026175 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 12355532 ~ 12358516 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016999 | antibiotic metabolic process | biological_process |
| GO:0072350 | tricarboxylic acid metabolic process | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0006099 | tricarboxylic acid cycle | biological_process |
| GO:0006101 | citrate metabolic process | biological_process |
| GO:0009060 | aerobic respiration | biological_process |
| GO:0043624 | cellular protein complex disassembly | biological_process |
| GO:0043062 | extracellular structure organization | biological_process |
| GO:0030198 | extracellular matrix organization | biological_process |
| GO:0017144 | drug metabolic process | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0003012 | muscle system process | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0030042 | actin filament depolymerization | biological_process |
| GO:0060538 | skeletal muscle organ development | biological_process |
| GO:0099080 | supramolecular complex | cellular_component |
| GO:0099081 | supramolecular polymer | cellular_component |
| GO:0044420 | obsolete extracellular matrix component | cellular_component |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0062023 | collagen-containing extracellular matrix | cellular_component |
| GO:0005581 | collagen trimer | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0099512 | supramolecular fiber | cellular_component |
| GO:0045259 | proton-transporting ATP synthase complex | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0044877 | protein-containing complex binding | molecular_function |
| GO:0008092 | cytoskeletal protein binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052446 | lncRNA | downstream | 128720 | 12226322 ~ 12226812 (-) | True | XLOC_026173 |
| TCONS_00052964 | lncRNA | downstream | 241750 | 12111780 ~ 12113782 (-) | True | XLOC_026171 |
| TCONS_00052445 | lncRNA | downstream | 243433 | 12111160 ~ 12112099 (-) | False | XLOC_026171 |
| TCONS_00052444 | lncRNA | downstream | 637683 | 11703909 ~ 11717849 (-) | True | XLOC_026166 |
| TCONS_00052963 | lncRNA | downstream | 774812 | 11576654 ~ 11580720 (-) | True | XLOC_026164 |
| TCONS_00052966 | lncRNA | upstream | 470680 | 12829196 ~ 12849611 (-) | True | XLOC_026177 |
| TCONS_00052447 | lncRNA | upstream | 772561 | 13131077 ~ 13131324 (-) | True | XLOC_026182 |
| TCONS_00052967 | lncRNA | upstream | 989702 | 13348218 ~ 13361083 (-) | False | XLOC_026183 |
| TCONS_00052448 | lncRNA | upstream | 996926 | 13355442 ~ 13358850 (-) | True | XLOC_026183 |
| TCONS_00052968 | lncRNA | upstream | 1049594 | 13408110 ~ 13410057 (-) | True | XLOC_026184 |
| TCONS_00051084 | mRNA | downstream | 2739 | 12345280 ~ 12352793 (-) | True | XLOC_026174 |
| TCONS_00051083 | mRNA | downstream | 128173 | 12202982 ~ 12227359 (-) | False | XLOC_026173 |
| TCONS_00051082 | mRNA | downstream | 168287 | 12128117 ~ 12187245 (-) | False | XLOC_026172 |
| TCONS_00051081 | mRNA | downstream | 168287 | 12128117 ~ 12187245 (-) | True | XLOC_026172 |
| TCONS_00051080 | mRNA | downstream | 328791 | 11977271 ~ 12026741 (-) | True | XLOC_026170 |
| TCONS_00051085 | mRNA | upstream | 2190 | 12360706 ~ 12381272 (-) | False | XLOC_026176 |
| TCONS_00051086 | mRNA | upstream | 2191 | 12360707 ~ 12381271 (-) | True | XLOC_026176 |
| TCONS_00051087 | mRNA | upstream | 525601 | 12884117 ~ 12890779 (-) | False | XLOC_026178 |
| TCONS_00051088 | mRNA | upstream | 525607 | 12884123 ~ 12890670 (-) | True | XLOC_026178 |
| TCONS_00051089 | mRNA | upstream | 534625 | 12893141 ~ 12903609 (-) | True | XLOC_026179 |
| TCONS_00051073 | other | downstream | 954232 | 11397269 ~ 11401300 (-) | True | XLOC_026162 |
| TCONS_00051071 | other | downstream | 993149 | 11358518 ~ 11362383 (-) | True | XLOC_026160 |
| TCONS_00051051 | other | downstream | 1807055 | 10536474 ~ 10548477 (-) | False | XLOC_026140 |
| TCONS_00051047 | other | downstream | 2142312 | 10213098 ~ 10213220 (-) | True | XLOC_026135 |
| TCONS_00051046 | other | downstream | 2168381 | 10187033 ~ 10187151 (-) | True | XLOC_026134 |
| TCONS_00051092 | other | upstream | 567086 | 12925602 ~ 12932891 (-) | False | XLOC_026180 |
| TCONS_00051093 | other | upstream | 587128 | 12945644 ~ 12970428 (-) | True | XLOC_026180 |
| TCONS_00051114 | other | upstream | 2529536 | 14888052 ~ 14888168 (-) | True | XLOC_026205 |
| TCONS_00051145 | other | upstream | 3277430 | 15635946 ~ 15638112 (-) | False | XLOC_026222 |
| TCONS_00051149 | other | upstream | 3297075 | 15655591 ~ 15659607 (-) | True | XLOC_026223 |
