RNA id: TU2001310


Basic Information

Item Value
RNA id TU2001310
length 1164
lncRNA type read_through
GC content 0.48
exon number 5
gene id G1747906
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49459688 ~ 49585178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATTTTGTTCATGTTGAGATGCTATGCTGTATTTGTCTATGGTACTTGCGCTATTCAACTTACCCCCTTGACTCCCAGCATCTAGGTTACAGAATACTGCTTCACAAAATGGAAGCAGCAGATGGTCGACAAGCAGGGATACCTACTTTGTAATCACCATGACCAGCGGGCAAAACTGAGGACAGCTATGGAAGAGGCTCTTTGCAGTGTTCAATGTCTTGAACATACCTGAGAGGAGTTGCCTTCAACTAGTGGAGGATACTCTACCACCAGCCCATTCAGCTAACTGCGCAGCAATGGTGGATTCCTGTGCTGCAGGGAACTTTATTGACCTGACCCTTGCCTCAACTTCAACTAATACCCGCTCTCCTCGCCTTTCCTGGTTCAAGCCCTCGATAATCAGTAATTAGGTTCCGGGACCATCAGACACATCAAACTACTCACTGCGCCCCCATGCAGATGCATCTACCCTCTGTCGGTGGCTGAAACCCAGGCCATCGAAGAGTACATTCATGAGGCGCTCCAACAAGGTTTCATCCGCACGTCCActtctacagggtccgcaggttAATTCTTTGTGGCCAAGGATGGAGGTTTACGCCTATGTATTGATTAGAGGACTCGATGACATCACCAAGTACCGTTACCCTCTCCCATTGTTGCCGGCAGCCATTAAAGAGCTCTGCGGGGCTCAGTTTaactttttaaattttttaaccaAATTGGACCTGCGGAGTGCATTCAATCTCATCTGCATCAGGGAGGAGGATGACAGCTTTTAGCACAATATCTGGTCACTGGAGGATCACTTTGCATGGATGAAAAATTAAAACTACAGTGGAGACCCTGAATCATCCCTCCTGGAAACCACAGGAGAGTTGGGAATGAGAGGTTGGGAAGTGTCGTGATGCTGCCCAAGAGCTTCTAAAAGTGCTACGGAGACAACCTGTCAGTGGAGATCCAAGCTGTCCTCTGAATTGACGATAAAGATGGATGGCAAACAGCCCTACCCTGAGAACATGTTGGGGTTACTACGCTTCATACGCAACCTCCATGAGCACTATGCTGAGGATTTAGAATCTGTTGACCTGATGAAGATGTTCCCTGATCTCTTTGGATGCGTCTACATGTTGGCCAAGAAACAGAGCTGGAATTCAAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001318 lncRNA downstream 56659 49506498 ~ 49507490 (-) True LOC118942941
TU2001114 lncRNA downstream 182798 49381017 ~ 49381351 (-) True G1747754
TU2001067 lncRNA downstream 225062 49338468 ~ 49339087 (-) True G1747707
TU2001064 lncRNA downstream 230684 49333242 ~ 49333465 (-) True G1747704
TU2001051 lncRNA downstream 245742 49318204 ~ 49318407 (-) True G1747691
TU2001346 lncRNA upstream 3624 49586945 ~ 49587226 (-) True G1747933
TU2001348 lncRNA upstream 6740 49590061 ~ 49590331 (-) True G1747935
TU2001352 lncRNA upstream 22176 49605497 ~ 49605868 (-) True G1747938
TU2001354 lncRNA upstream 22865 49606186 ~ 49608415 (-) True G1747940
TU2001351 lncRNA upstream 35023 49618344 ~ 49623432 (-) False G1747937
XM_036958084.1 mRNA downstream 52188 49506252 ~ 49511961 (-) False LOC118942941
XM_021578088.2 mRNA downstream 62085 49493629 ~ 49502064 (-) False LOC110500619
XM_036958083.1 mRNA downstream 68897 49493629 ~ 49495252 (-) False LOC110500619
XM_036958081.1 mRNA downstream 79861 49470621 ~ 49484288 (-) True LOC118942940
XM_036958082.1 mRNA downstream 91905 49470621 ~ 49472244 (-) False LOC118942940
XM_021578399.2 mRNA upstream 131 49583452 ~ 49585199 (-) True LOC110500879
XM_021578100.2 mRNA upstream 52698 49636019 ~ 49654484 (-) True LOC110500626
trnaa-ugc-150 mRNA upstream 83143 49666464 ~ 49666539 (-) True trnaa-ugc-150
XR_005038442.1 mRNA upstream 228494 49811815 ~ 49819364 (-) True LOC118942791
XM_021578115.2 mRNA upstream 512361 50095682 ~ 50158478 (-) False LOC110500634
TU2001319 other downstream 49985 49512069 ~ 49514164 (-) True G1747908
TU2001321 other downstream 62222 49499491 ~ 49501927 (-) True LOC110500619
TU2001316 other downstream 87086 49459688 ~ 49477063 (-) False G1747906
TU2001151 other downstream 139819 49420478 ~ 49424330 (-) True LOC110500878
TU2000153 other downstream 1153396 48408491 ~ 48410753 (-) True G1746833
TU2001309 other upstream 1285 49584606 ~ 49585178 (-) True G1747906
TU2001347 other upstream 4375 49587696 ~ 49588788 (-) True G1747934
TU2002718 other upstream 950684 50534005 ~ 50541498 (-) False LOC110500654
TU2002719 other upstream 950684 50534005 ~ 50541695 (-) True LOC110500654
TU2002708 other upstream 959114 50542435 ~ 50552525 (-) False G1749122

Expression Profile