RNA id: TCONS_00004863


Basic Information

Item Value
RNA id TCONS_00004863
length 810
lncRNA type retained_intron
GC content 0.42
exon number 6
gene id XLOC_002614
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9247593 ~ 9269733 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACTAAAACCCGCCCACAACTACAGGAATGTCGTCTGTATGGGATGATTTGGATCTTCTCCTGGAGTCCCCATCCTCTCTGACTGTAAATTCAACAGCACGTGGCACAGTTAAAGAAAAAACTGGATTTAAGCCAGACGAGGATGCTGCTGAGTTAAGGAAAGCCATTGAAGGCATTGGCACCACCGAAAAGACTCTTATTGACATTCTGTGTCAAAGAAGCAATGCCCAACGTCAGCTGATCTGTAAAGCGTATCAGGACAACACTGGCAGGTCTCTTTGTGATGACTTGGAAGGTGACACACATGGAGATTTTGAAGATATTCTGGTGGCCCTGATCACTCCTCCTGCCAAGTTTGACTGCCTGGAGTTCAAAAGGGCTATAAAAGGTGCAGGTACAAAAGAGAGCTTGTTGATAGAGCTGCTGGCCTCCCGCTCCAACTATCAAATCAAGGCCATGCGTGATGCATATTTGGCTGGTTGGGTTTTTATTCTCtctcatttttttacattaaaacagcatttttacttttgatctCATTCAAATGTCTATTTTCCAGAAACCGGAAGAAATCTAATTGATGATCTGAAATCTGAGGTGTCCGGGGACTTTGAAAAGACTTTGTTGAACCTGGCTGAGGTTTagtccaatgtttttttttttttttttagtcctgCACTGTATTCAAATTCATTCAAATGTGTTATGCAGCTGGCTTGCTCACAATTTGGTTTTGTTTCTGTCTAAAAGGGCAAGAGGGATGAAAGTACTAATGTGGACGTGGCAAAAGCTAAAGCAGATGCCAAGG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0004859 phospholipase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-128 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in dorsal aorta. Orthologous to human ANXA3 (annexin A3).

Ensembl:

ensembl_id ENSDART00000144224

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006002 lncRNA downstream 72918 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00006001 lncRNA downstream 118031 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006000 lncRNA downstream 406105 8841698 ~ 8858568 (-) True XLOC_002606
TCONS_00005999 lncRNA downstream 406124 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00005998 lncRNA downstream 606996 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00004867 lncRNA upstream 265366 9534615 ~ 9536874 (-) False XLOC_002618
TCONS_00004868 lncRNA upstream 265522 9534771 ~ 9537977 (-) False XLOC_002618
TCONS_00004870 lncRNA upstream 265555 9534804 ~ 9537589 (-) False XLOC_002618
TCONS_00004871 lncRNA upstream 266827 9536076 ~ 9538300 (-) False XLOC_002618
TCONS_00004872 lncRNA upstream 267393 9536642 ~ 9537975 (-) False XLOC_002618
TCONS_00004861 mRNA downstream 72223 9190065 ~ 9192450 (-) False XLOC_002613
TCONS_00004860 mRNA downstream 73842 9186651 ~ 9190831 (-) False XLOC_002613
TCONS_00004858 mRNA downstream 149290 9105007 ~ 9115383 (-) True XLOC_002610
TCONS_00004854 mRNA downstream 175128 9006574 ~ 9089545 (-) False XLOC_002608
TCONS_00004857 mRNA downstream 177957 9037371 ~ 9086716 (-) True XLOC_002608
TCONS_00004865 mRNA upstream 35801 9305050 ~ 9346360 (-) True XLOC_002616
TCONS_00004866 mRNA upstream 128056 9397305 ~ 9410068 (-) True XLOC_002617
TCONS_00004874 mRNA upstream 565647 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004875 mRNA upstream 566430 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004876 mRNA upstream 568043 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004859 other downstream 122994 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 175037 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004855 other downstream 247836 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004848 other downstream 586845 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 1304835 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004869 other upstream 265533 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 1050059 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other upstream 1060215 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004903 other upstream 2492131 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 4035816 13305065 ~ 13305183 (-) True XLOC_002643

Expression Profile

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