RNA id: TCONS_00051107


Basic Information

Item Value
RNA id TCONS_00051107
length 661
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_026190
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13911950 ~ 13921173 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCACACGAAGAAAGAAGGCAACTTTAAGCGTAAATGAGCgttaaaatagaataaattcaACCTCGACCGACAATGAAGATCTGCATAAAGCGAAGAGATTTTAATCAGAGATCAACGCAACATTCGTTGACGACGATTTTGTGatagcaaaacaaaaacataatcgCTATTCCGACGGATTACTTGTCGAAAAAGAAGGCTGGCGATGAATACTATCAACCTAACAAGTGTGAACTTAACGGAAAGAACTGGACATGCTTTTCAGTACTCCTTTTCAAGCGAGGACCCGATGTTTAAAGACTACAGACCGGTCAGCCGAGACCTCATTCCCTTACCGAAGGGGGTTTTGTACCTGTTAATGGCGGCGTTGGTCATTGTTGCAGTCGCCTATGCCATAGTGGGACATCTAATCAAAGACCTCGCAAATGATGTAGTAGGTAAGAGATATATAGCCTCAGAAACTTTAGTGTATCTTGAAAAACCTGTAAAAAGTGGTGGACTTTGGCTTATTGGAAGTCTGAAACATAAATTAGTCCAATAAATCAAGCATATTTTCTGTTAGCTTGCTGTACGTTTCTTACAGTGTAAACATGAGGTTCTTAGATCTTTAGAATGTTCGTCACTGTCATTAAAACAGTTCTATTTGGAATTGTTTGCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165174

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051098 lncRNA downstream 487344 13424839 ~ 13432873 (-) False XLOC_026185
TCONS_00052968 lncRNA downstream 510160 13408110 ~ 13410057 (-) True XLOC_026184
TCONS_00052967 lncRNA downstream 559134 13348218 ~ 13361083 (-) False XLOC_026183
TCONS_00052448 lncRNA downstream 561367 13355442 ~ 13358850 (-) True XLOC_026183
TCONS_00052447 lncRNA downstream 788893 13131077 ~ 13131324 (-) True XLOC_026182
TCONS_00052969 lncRNA upstream 238364 14159537 ~ 14198357 (-) True XLOC_026193
TCONS_00052970 lncRNA upstream 239353 14160526 ~ 14199783 (-) True XLOC_026194
TCONS_00052971 lncRNA upstream 249127 14170300 ~ 14184139 (-) True XLOC_026195
TCONS_00052972 lncRNA upstream 254789 14175962 ~ 14178936 (-) True XLOC_026196
TCONS_00052973 lncRNA upstream 305884 14227057 ~ 14270955 (-) True XLOC_026197
TCONS_00051105 mRNA downstream 320735 13582019 ~ 13599482 (-) True XLOC_026189
TCONS_00051104 mRNA downstream 373607 13523773 ~ 13546610 (-) True XLOC_026188
TCONS_00051103 mRNA downstream 410934 13487760 ~ 13509283 (-) True XLOC_026187
TCONS_00051102 mRNA downstream 458856 13454043 ~ 13461361 (-) True XLOC_026186
TCONS_00051101 mRNA downstream 459161 13445772 ~ 13461056 (-) False XLOC_026186
TCONS_00051108 mRNA upstream 16253 13937426 ~ 13946446 (-) False XLOC_026191
TCONS_00051109 mRNA upstream 19837 13941010 ~ 13955878 (-) True XLOC_026191
TCONS_00051110 mRNA upstream 178520 14099693 ~ 14103551 (-) True XLOC_026192
TCONS_00051111 mRNA upstream 575146 14496319 ~ 14498295 (-) True XLOC_026199
TCONS_00051112 mRNA upstream 644588 14565761 ~ 14571514 (-) True XLOC_026200
TCONS_00051093 other downstream 949789 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051092 other downstream 987326 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051073 other downstream 2518917 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051071 other downstream 2557834 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051051 other downstream 3371740 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051114 other upstream 966879 14888052 ~ 14888168 (-) True XLOC_026205
TCONS_00051145 other upstream 1714773 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051149 other upstream 1734418 15655591 ~ 15659607 (-) True XLOC_026223
TCONS_00051151 other upstream 1773042 15694215 ~ 15697300 (-) False XLOC_026225
TCONS_00051152 other upstream 1775958 15697131 ~ 15706767 (-) True XLOC_026225

Expression Profile

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