RNA id: TCONS_00052971


Basic Information

Item Value
RNA id TCONS_00052971
length 339
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_026195
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14170300 ~ 14184139 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCACTTCACTCTCTTCCTCTGAACATCCTCTCAGCTCTACTGGTTTCTTCTCTGTTTGGAGTTTTAGCACTTCCAGGAGGACAGAGGTCTTTCTCTTTGAGAGATCTATGATCCACACATCAGGAATCTGGAAAACTGACTGTAATGCTGGAATGAAACTCCTGCCTGTTTGAGTCTCATAGTTCTTCACATGTGAGTAAAGATCCAGCAGTGCCTTGCATGTGTCTTGGTTGTTTTTGTTTCCCACATCAGCAAAGTTGCAATGGCATTGAGATGCTTTATGGAAGAATTCTAGAAGGCTTGCGATTTGCTTCAGGGGTTCTTTATGAAGCTTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051098 lncRNA downstream 737427 13424839 ~ 13432873 (-) False XLOC_026185
TCONS_00052968 lncRNA downstream 760243 13408110 ~ 13410057 (-) True XLOC_026184
TCONS_00052967 lncRNA downstream 809217 13348218 ~ 13361083 (-) False XLOC_026183
TCONS_00052448 lncRNA downstream 811450 13355442 ~ 13358850 (-) True XLOC_026183
TCONS_00052447 lncRNA downstream 1038976 13131077 ~ 13131324 (-) True XLOC_026182
TCONS_00052973 lncRNA upstream 42918 14227057 ~ 14270955 (-) True XLOC_026197
TCONS_00052974 lncRNA upstream 116861 14301000 ~ 14317878 (-) True XLOC_026198
TCONS_00052449 lncRNA upstream 554250 14738389 ~ 14738629 (-) True XLOC_026202
TCONS_00052975 lncRNA upstream 616523 14800662 ~ 14801964 (-) True XLOC_026203
TCONS_00052976 lncRNA upstream 689364 14873503 ~ 14875270 (-) True XLOC_026204
TCONS_00051110 mRNA downstream 66749 14099693 ~ 14103551 (-) True XLOC_026192
TCONS_00051109 mRNA downstream 214422 13941010 ~ 13955878 (-) True XLOC_026191
TCONS_00051108 mRNA downstream 223854 13937426 ~ 13946446 (-) False XLOC_026191
TCONS_00051106 mRNA downstream 249127 13911950 ~ 13921173 (-) False XLOC_026190
TCONS_00051111 mRNA upstream 312180 14496319 ~ 14498295 (-) True XLOC_026199
TCONS_00051112 mRNA upstream 381622 14565761 ~ 14571514 (-) True XLOC_026200
TCONS_00051113 mRNA upstream 507173 14691312 ~ 14695033 (-) True XLOC_026201
TCONS_00051115 mRNA upstream 884323 15068462 ~ 15080226 (-) False XLOC_026206
TCONS_00051116 mRNA upstream 884629 15068768 ~ 15080339 (-) False XLOC_026206
TCONS_00051093 other downstream 1199872 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051092 other downstream 1237409 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051073 other downstream 2769000 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051071 other downstream 2807917 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051051 other downstream 3621823 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051114 other upstream 703913 14888052 ~ 14888168 (-) True XLOC_026205
TCONS_00051145 other upstream 1451807 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051149 other upstream 1471452 15655591 ~ 15659607 (-) True XLOC_026223
TCONS_00051151 other upstream 1510076 15694215 ~ 15697300 (-) False XLOC_026225
TCONS_00051152 other upstream 1512992 15697131 ~ 15706767 (-) True XLOC_026225