RNA id: TCONS_00004865


Basic Information

Item Value
RNA id TCONS_00004865
length 1446
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_002616
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9305050 ~ 9346360 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCACATGTTCTGATGATGCAAAACACTGAATGTAGTGACATGTGCCCTTGAGTTGCCCATGTTGTCAAAAAGGGACTGTAATGCAAGGCATGCTTGCTAAGATATATTTTTCTGCATGAGAGTGAATTTAAAAGCGCCCCCTGGTGGCACTATTAAACTTCATCCAATCTCCAAAGTCTAGTTACCACAGACATGGCCTTGAGTCATCTGAACCTCCTGCGGCCAGTATTGTACCGATCTCTGCCATCAGTTTTTAGGATCCCACGACTGACCAGTTCAAGAGTCTCCTTTCTGCCTCAAGTGAGCCAGTGTCCCGTGGCTCTGCCGAATTACGCCCGTCATTATGCCACAAAGAAGAGTAAAGcaAAGGCAAAAGGGCAGACAGCTAAAGTGAACATCAATGCAGCTTTGGTGGAGGATATTATCAGCCTGGAGGAGGTGAAGGAAGACATGGCTGCTGTTCTGGCTGCTCTGAAAGAAGATTTCAGCCGCAACCTCAGCGTTCGCACATCACCAGGTGCACTGGACCACATTACAGTCACCACAAAGGATGGCAAATTTCCTCTCAACCAGCTGGGCCAGATATCCATGAAGTCTCCTCAGCTACTTGTGGTCAACATGACTGGCTTCCCAGAGGCCATGGTAGCCGTCACCCGTGCCTTGCGAGAGAGCAGCATGGGACTCAACCCAGAGGTGGAGGGCACCATCATCAGGGTGCCTGTTCCCAAGGTAActcgtgaacacagggagaatctGGCGAAACTGGCGAAGCAGTTCAGTAATAAATCTAAAGACTCGCTGAGGAGAGTCCGATCAAATGCCATCAGTCAAGTGAAGAAGAGCAAAGATGCCGTTTCTGATGATACCATTCACTTGATAGAAAAGCAGATTCAACAAATGACCGACAGTTTTACAGCAGACATCGACAAACAGCTGGCAACTAAAACCAAGGAGTTACTTGGATGACAACAAGGCCTTCAAACTTTCACAACACCTCCGGAAACCCAACTATGTCCCACTATCAGGTCAAActggaacaaaacaaaacagctaaTGAACTTACTGACGGAGGCACTGAAGGTGGTGTTTTGGAGGGTGTTTTTCCTCATGCATAAACAAATGTTGGCGTGGCACGTCAGTGGTTTATGGTGCTCCTtgtgttctcatctgcaaacaaacaaacggaGGGCAAATGACGTTTTAATGTGATTTGAGGCACTCCTCCTAATCAAAGCGATGCCACAAACATGGTGTTTATGTCAAAAACACAGTACTGAATGTAAATGCTGTGGTGAAAGTCACACAGGGTGAACAACGAGTGCGCACATGATGTCAACATTtgtttcacatttacatttacagcccaaaaatagtcatttattttttgctgtgtgaTCTGATCTGCTAATGTAAACTGAAAAAATGCATTGGTTATTgttctgtt

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0043023 ribosomal large subunit binding molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040704-12 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in translation. Predicted to be active in mitochondrion. Is expressed in eye; immature eye; midbrain; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human MRRF (mitochondrial ribosome recycling factor).

Ensembl:

ensembl_id ENSDART00000039536

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004864 lncRNA downstream 35339 9264673 ~ 9269711 (-) True XLOC_002614
TCONS_00004863 lncRNA downstream 35801 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00005750 lncRNA downstream 37339 9266053 ~ 9267711 (-) True XLOC_002615
TCONS_00006002 lncRNA downstream 113295 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00006001 lncRNA downstream 158408 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00004867 lncRNA upstream 188255 9534615 ~ 9536874 (-) False XLOC_002618
TCONS_00004868 lncRNA upstream 188411 9534771 ~ 9537977 (-) False XLOC_002618
TCONS_00004870 lncRNA upstream 188444 9534804 ~ 9537589 (-) False XLOC_002618
TCONS_00004871 lncRNA upstream 189716 9536076 ~ 9538300 (-) False XLOC_002618
TCONS_00004872 lncRNA upstream 190282 9536642 ~ 9537975 (-) False XLOC_002618
TCONS_00004862 mRNA downstream 35317 9247593 ~ 9269733 (-) False XLOC_002614
TCONS_00004861 mRNA downstream 112600 9190065 ~ 9192450 (-) False XLOC_002613
TCONS_00004860 mRNA downstream 114219 9186651 ~ 9190831 (-) False XLOC_002613
TCONS_00004858 mRNA downstream 189667 9105007 ~ 9115383 (-) True XLOC_002610
TCONS_00004854 mRNA downstream 215505 9006574 ~ 9089545 (-) False XLOC_002608
TCONS_00004866 mRNA upstream 50945 9397305 ~ 9410068 (-) True XLOC_002617
TCONS_00004874 mRNA upstream 488536 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004875 mRNA upstream 489319 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004876 mRNA upstream 490932 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004877 mRNA upstream 538043 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004859 other downstream 163371 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 215414 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004855 other downstream 288213 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004848 other downstream 627222 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 1345212 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004869 other upstream 188422 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 972948 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other upstream 983104 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004903 other upstream 2415020 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 3958705 13305065 ~ 13305183 (-) True XLOC_002643

Expression Profile

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