RNA id: TU2008119


Basic Information

Item Value
RNA id TU2008119
length 4939
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1753787
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 54342217 ~ 54348143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATTTCTTGCAAACCAGCGAAGTAAAATAAGAAGAAAAAAACTCAACAAAAGCTAAACAAAAGGCTTAGTTACAGTGTAATAATCATTTCAACCCATTTCGCCATCCTCTTTATCGTCAGCCACTGAGCCACAACTCcgctgaacaaaaatgtaaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatctgaGAAATGTTCCATAATGTTCCAAAAGCTTTTTTTCCCTCTCTAAAAttgagcacaaatttgtttacatccttgttggtgcgcatttctcctttgccaagatcatccatccacctgacaggtgtggaatatcaagaagctgataaaacGGCATGATCAtgacacagatgcaccttgtgctggggacaataaaaggccactctaaaatgtgcagttttgtcacacaacacagatgTCACAAcacagttttgagggagtgtgcaattggcaggAATGTCCAGTTGTTGAATGTTAATTTcgctaccataagccgcctccaacgtcatattagagaatttggcagtacatccaactggcctcaaaaccgcagaccacatgtaaccacgtcaccctaggacctccacatccagcttctttacCTGCGTGATCGTCTGACGgtgtgctgaggagtatttctgttggtaataaagcccttttgtgggggaaaaactaattctgattgggtgggcctggctcccagtgggtgggtctatgccctcctgggcccacccatagctgcaaccctgcccagtcatgtgaaatccatggattagggcctaatgaatttatttcaattgactgatttccttctatgaactgtaactcagtaaaatctttgaaattgttgcatgttgcgtttatatttgtgttcagtatacaTAAAATCACAGCATATGGTATCCATTGGTTACACAGTTCTTTGTATGTCCACACCAtataattaggaattagaatacttaTTTAGTAAGATCTTAATGGTTTACACAGACAATGCAAAATAAACGATGACAGAACCAAATTCATTTGAACATATTCTTCATTTTGCAAAACACCAACGCCAACGTCCTTCTAATTGTGGCTTGGAGAGAGGAGGCTTTGGGTTAAACTGAGCCATTAAGTTAAAAGAAGGAATCAAATCCTATTTGATAAAGACTAATCATTCCATAACATTTGGGTCAATGCAATATTAAAAAAGGGACATTCTACAACAATAAAAAGTAGCCTGTGGCACTTTTCTGCGACTGTTGTGGCACAATGGGTACACCGGTATACAGAACGGTATTCATAAATACCTTTAAttacaatcaaacaagcaaaaacaTGGGTAGTCACTCATTGACAAGATGTTAAGTCATATTATGTATCTATATTAAAGGCAGAACAACAATAAATCCGGTTGCATCTATGGGCAGCTGATGTCCTGTACTGTAAAGTTGTGAATCCAACACTATATTGACCTAGATGTGAGGGAGACTCGCTGCTGTTTACGCCGCGTGGAAGGCCTGTTTGTCTAAAGACATGATGAAACGGGCTCTGGTTGTGCAATCTGGCCTAGCTTGAACTATCTGGTCTATCTGAGCTCTGCTGATCTGGCCTGAACTTGCCCCTAAGACACTGACTGATCTACGGacagttttgcatttcccccctaatggttaaggttaggatttggaGAATTAAATCCgatcctagatctgtatctaAGGGCAAGTTCGGAGCTCAGACCTGGCTGGATATGTGGTCCTTAGTTTCGGCCTTCCAGGGAACACTATGGTTTCCACAGCTGTTTCAAATGAGACAACAAACACAGTCTTTCCCAACAGCCCTCCATGGTGGGAAAACCCTTCTCACCATTGATAACGTTACATCAACATTCTTTCAATGTTACAATAATGTTGCAACGGTGAGCCACTTTGCCAGAGGGTCAACAAACCCGAAAGGTAATTAGacttttaaccaatcagagtCTGGTTTGAACTGTATTCATGGTAATATGCCATCTAGCTGACACTTTTATCCAATCAGAGTCTGGTTTGAACTGTATTTATGGTAATATGCCATCTAGCTGACACTTTTATCCAATCAGAGTCTGGTTTGAACTGTATTTATGGTAATATGCCATCTAGCTGACacttttaaccaatcagagtCTGGTTTGAACTGTATTCATGGTAATATGTCATCTAGCTGACacttttaaccaatcagagtCTGGTTTGAACTGTATTCATGGTAATATGTCATCTAGCTGACacttttaaccaatcagagtCTGGTTTGAACTGTATTCATGGTAATATGTCATCTAGCTGACACTTTTAACCAATCGATTTACGGTCATGcgtggatacattttttttaatttgatttattatttGATTTAAACTAACTGTACAACTTAACTACACACGCATTCATACACAAATCACTCTTCCAAACTCAACTTTATAAAACATAGTTCGATAAAGCTGACACGAGATTTTAGGTAGTGCATTTTGCAACTTTATCACCATTCACATTCAACGAGGCACACTCAAGCACTTCAATTTGCTGTGGTCTCCTTTTTGTTTCGATAAAGCACTTTAATTGCAGATTGCCATTAGAAATCAGACAGAAGACATGAGCTTTTATGTAGTCTTACTTACAGAAGGAGCTAAATTAAAAAATGATATGAATTCAGATTGACTGTATTTTTGCCACTATTACCTTCCCATTAGATTTAAAGAAACCATCCACATCCTCCCTTGAAATGTCTATAAATACATGTTGAACATTAAAGCAGCTGAATTGAGCTTTTCATCAGACAAAagtggtgttgtgtgtgtcaaAGAATGAACAAAATGATCAACAACATCAAGAAAACAAGCACACACTTTCATGCATTTCCATTGTAGATGAACCTCAACAATCTCTCATATACATGTGCTAACGCTAACATTTACCTTGGCTTGCATAACAAACTCTGACAACAAATATACACAGTATGTGTCACATACTGCTCACAGTTGAATGATGGGGTTGAGCTTCCGGAGACGAAGCAAAGCCAATGCATGTATTTCCACTACACACTGCGTGTGACCGTTGATGGGTTTACAAAGAACAAACATAGAAAGGGTTAATTGTCTATCACAGAAGGTCTAGATAAAGCTCATTGTTAATTCATTAAGCGAAACTTAACTCGTTATGCTTCAGCGCTGCTGCAGGTCTGTGTTAAGATAGTGTGGTGACAACGAACAGATAAGTGTGGCATAATAAGTGTCTTAACTCATCTGAAAACGTTCTGAAAGCGTTCATAGAAACGTCTGACAATGATTCCACAAGTCAAAAATAGCTtacaaaaataatgttttttttatttttatgggaGGGCCATGTACGTAAAAGTGTCTGGCAATGCGGTGTTTGACAACGTGACTTGAAAGAACCTGTTGCTCCACACATCTGCTGTGGGTGTCAGTGGTGCCAATGCTAGAGCCGGTACCCATGATTCTCGCTGCTGTCCCTGATCCAACCTCAACTCTCCTATCTTCACTGATTTACGAGTGGCTTGTTGTAACAAATCACAGCTAGCAAATAAACTACCAACGTAAAACATATTTTCTTATCTTTATTTAAGATTGCTCTCAATTTGTATGACGAGAAAACAAACACAAATATAGTAAGGTGCTTTGACGTTTTCTGAAGTCAAACTGTAGTAGTTTCTTATCCATGTCTTTGGCCTTGTCATGCCGCACTGTACTGAGTAGCCATGCCCTCCACTGCTGTAAAATGATACCTCTGTTGTTCAGATATGAGATCTGTGGTGGGTTAGAGGCTAGAGCAGGCTACAGGGGGAAAAGGGAGGATAAGGAATGAAAATGAAGGAAAGAAAAGGAGATGGAGTGAAAAAATTGTaagaggagaggtaaggagaggtgggacgagacagagaggagagaggagaggtaaggagaggtgggacgagacagagaggagagaggagagaggagaggtaaggagaggtgggatgagagagagaggagagaggagaggtaaggagaggtgggatgagagagagaggagagaggagaggtaaggagaggtgggatgagagagagaggagagaggagagaggagaggtaaggagaggtaaggagaggtgggatgagagagagaggggagagaggagagagagaaaaaagagagagagagcgaaagagagagagacgttaaACAAGACACGGTAGATAAGGAAAGAGAGTGAGACCTTAGAAAAACAGTGAAAGGAACGATAAGAGGGGAAAACTAAACCGTTCCAAGTGGAAACAAACACAGTAAAAGGAACACAGATGAAACCAGTGAGAAACACAGGAACAAAGAGAAAAAAAGCTCATTAATTTTTAGAAAAGCTGCTATTTCTCTTTTTTGCAGAGGAAGGGAGAGCGGGATGCAGAACTCgcatagagagatgagaggagaagaggagaagaggattggaggaggagtGGTGTGACGGACCATGTAAATGCATCTCCCTTACCTCCCTTAAAGGTGATCACAGTAACATTCAGACCACTCGCATACAAAAGCTATAGGTGACGAACATCGCCTCAACGTTGGATGTTACAGCGACATTGTGAAACCATTTCCATTGGGTACTCCCAACCACTCCTCATTCTGTCTGCGATTAGGATGTTTCTCAGTTGTAACGTAACGGTGCATATGTAGATTATTTCagatgtttttttctttcttccagACAGGACAGACGTTGTAGACTGGAGACGTTATAATGATTTTTCTCCCGTTCTCCTGCTTGGCTTTAGAAAAGGCGTGCCTTCTTTTTCATGTCGTTCTTCTTCCACAGAGCCATGCGGTCAAACTGATTCAGGGTCATCCCAAACACATGGTGGAAGTCCTCTGGGGAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2008149 lncRNA downstream 4436 54337322 ~ 54337923 (-) True G1753803
TU2008059 lncRNA downstream 82147 54229083 ~ 54260212 (-) True G1753760
TU2007982 lncRNA downstream 157698 54149519 ~ 54184661 (-) True LOC110500730
TU2007932 lncRNA downstream 295410 54046570 ~ 54046949 (-) True G1753647
TU2007924 lncRNA downstream 308476 54032930 ~ 54033883 (-) True G1753639
TU2008188 lncRNA upstream 82809 54430952 ~ 54431689 (-) False G1753838
TU2008189 lncRNA upstream 82809 54430952 ~ 54431689 (-) True G1753838
TU2008191 lncRNA upstream 84178 54432321 ~ 54432723 (-) True G1753839
TU2008213 lncRNA upstream 132643 54480786 ~ 54481566 (-) True G1753859
TU2008329 lncRNA upstream 339358 54687501 ~ 54761906 (-) True G1753966
XR_002470152.2 mRNA downstream 135913 54203826 ~ 54206446 (-) True LOC110500733
XM_021578256.2 mRNA downstream 138843 54202804 ~ 54203516 (-) True LOC118936296
XR_002470153.2 mRNA downstream 145593 54195072 ~ 54196766 (-) True LOC110500734
XM_036958213.1 mRNA downstream 157707 54073119 ~ 54184652 (-) False LOC110500730
XM_036958236.1 mRNA upstream 169935 54518078 ~ 54925493 (-) False sorcs2
XM_036958237.1 mRNA upstream 169935 54518078 ~ 54925493 (-) False sorcs2
XM_036958238.1 mRNA upstream 169935 54518078 ~ 54925493 (-) True sorcs2
XM_021578412.2 mRNA upstream 613683 54961826 ~ 54966157 (-) False LOC110500893
XM_036958239.1 mRNA upstream 613683 54961826 ~ 54966157 (-) False LOC110500893
TU2007921 other downstream 310053 54031582 ~ 54032306 (-) True G1753637
TU2006354 other downstream 837348 53502919 ~ 53505011 (-) False G1752321
TU2008433 other upstream 494922 54843065 ~ 54849083 (-) True G1754055
TU2007965 other upstream 617033 54965176 ~ 54966105 (-) True LOC110500893
TU2007944 other upstream 758543 55106686 ~ 55107581 (-) False LOC110500749
TU2007945 other upstream 758543 55106686 ~ 55107531 (-) True LOC110500749
TU2008643 other upstream 924075 55272218 ~ 55273949 (-) False G1754243

Expression Profile