RNA id: TU2013299



Basic Information


Item Value
RNA id TU2013299
length 986
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1758294
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59383531 ~ 59387972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCACTCATCCACTGTACAAAGACATGAACATATCTAAAGTAATTCCCTAAAGAGGATGACTTACAGGAAGTCGAGAGCTTGGGACTGTCTGCAAAAAGAggattctgagataattggctttaaagttccgaaccctcattggtttgaatggtgtcagcaattTGAACCTAATGTTATTTTGaacttaacaacatgaattgaggtatttagagtactatatagctagagaacattgaacagaacaaggctatgCCAATAACTACATTTTGAGCAAAAATCCAGAGATAACGTGACACAAGTCAGTCCCGAGCTCTCGATATGTACGTGATTGCATACAAACATAcgcatacacactctctctcacacacacacacactctctctcacacacacacaaacacacacatttcccacTTTCCTCACTACCCCCAACACCCACCACACTAATCGCACACACGAAGCCTCACCCTCCCAAAACATTCCCAAAATCCCCACAATCGGCATCTAAACGTGTAAAGGCATCCTGAGACAGAATCCCATAAGATCCCGTACGCTTTGTCCCCGTTATAATACATAACGCCTAAATCTATTTCCTGTGACGTTTGGGAAAAGGATAATGAAgttaaattcaaagggctttgtTTATCCTTGCCCTTTTCAGCTGTGGCTTTTTCTGCAGCTGTGCCAACTCACGCTGGTAGACTAGTACTGACCTCGTGCCTTTCTCCAGCATCGCTATGCTAAATGAATTGGTCATAAACGCAGGTATGTGATATTTTAAGACAATAAGCATGTACATAAGATCAAAAGTGCCCATCTTTTTAAATCAGTGCTACTCCAGTCAACTACTGTACATTAAAGGTTATACTTGTAACATTTTCACctgccaccccaaagtttatttgtgaatcaaatcaaatcaaatatatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2013191 lncRNA downstream 28333 59354356 ~ 59355198 (-) True G1758203
TU2013188 lncRNA downstream 29382 59352809 ~ 59354149 (-) True G1758201
TU2013163 lncRNA downstream 35382 59343822 ~ 59348149 (-) False G1758177
TU2013164 lncRNA downstream 35382 59343822 ~ 59348149 (-) True G1758177
TU2013181 lncRNA downstream 42720 59340444 ~ 59340811 (-) True G1758194
TU2013322 lncRNA upstream 35713 59423685 ~ 59425015 (-) True G1758314
TU2013326 lncRNA upstream 41154 59429126 ~ 59430757 (-) False G1758317
TU2013327 lncRNA upstream 41154 59429126 ~ 59430757 (-) True G1758317
TU2013379 lncRNA upstream 126642 59514614 ~ 59514862 (-) True G1758362
TU2013384 lncRNA upstream 128290 59516262 ~ 59533218 (-) True G1758364
XM_021578306.2 mRNA downstream 99406 59282169 ~ 59284125 (-) True LOC110500775
XM_036958295.1 mRNA downstream 102869 58961261 ~ 59280662 (-) True LOC110500776
XM_021578311.2 mRNA downstream 871131 58508576 ~ 58512400 (-) True LOC110500778
XM_021578310.2 mRNA downstream 871139 58508576 ~ 58512392 (-) False LOC110500778
XM_021578313.2 mRNA downstream 875051 58499859 ~ 58508480 (-) True LOC110500779
XM_021578303.2 mRNA upstream 66743 59454715 ~ 59459893 (-) False dctn6
XM_021578302.2 mRNA upstream 66743 59454715 ~ 59460683 (-) True dctn6
trnay-gua-65 mRNA upstream 212549 59600521 ~ 59600607 (-) True trnay-gua-65
trnay-gua-66 mRNA upstream 213227 59601199 ~ 59601285 (-) True trnay-gua-66
trnay-gua-67 mRNA upstream 213903 59601875 ~ 59601961 (-) True trnay-gua-67
TU2013080 other downstream 188041 59192432 ~ 59195490 (-) True G1758095
TU2012593 other downstream 577706 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1340474 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 1474397 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 1480938 57902086 ~ 57902593 (-) True G1757073
TU2014036 other upstream 635795 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 734570 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 800438 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 970858 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 971453 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile