RNA id: TU2013384



Basic Information


Item Value
RNA id TU2013384
length 642
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1758364
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59516262 ~ 59533218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcagagagtggtttcgaccgatcgtacacgtggctaaagtagacatcacgcttccgcttcgcttctgtaatcagcatgacctgtacaaactgacagaagcagtcaaaaaataatcacggagggcactgagacatgcccatgaaattatggtttaatatttctgtttccacttcattgctaaagcaaactgaatagcagaggatggtttcgatccacttcatccctccactttcaggtaccccaaaacaatacttgaactcacaataaatggattaggcggtcagtgtcttaagtcactgtggaaatgtgtgatcagcatgacctatatgaacTGATGAAAAACTGCATTTCgtgggcaacatgcccatgaaattctgatctctcttccttcacaggaatttgcattcatccaccccagatgggactcaaacccacaatccctggcttagaaggccagtgccttatccattaggccactggggccaATACAGTCCCTCATTAATGCTACTCTGTTATCTTTATTTCAGAAGAATAACTCCCTCTGAATAGGGAGAGGCATTTTCAAACCCCAAAATAATGTGATCCAGCTCATGTTTCTTAAAATAGCCATCACTGCAGGAAGAGCATAGGAAAGTTCAGTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2013379 lncRNA downstream 1400 59514614 ~ 59514862 (-) True G1758362
TU2013326 lncRNA downstream 85505 59429126 ~ 59430757 (-) False G1758317
TU2013327 lncRNA downstream 85505 59429126 ~ 59430757 (-) True G1758317
TU2013322 lncRNA downstream 91247 59423685 ~ 59425015 (-) True G1758314
TU2013299 lncRNA downstream 128290 59383531 ~ 59387972 (-) True G1758294
TU2013459 lncRNA upstream 79450 59612668 ~ 59650139 (-) False G1758417
TU2013471 lncRNA upstream 86010 59619228 ~ 59622300 (-) True G1758424
TU2013475 lncRNA upstream 101365 59634583 ~ 59637718 (-) True G1758428
TU2013457 lncRNA upstream 115791 59649009 ~ 59651669 (-) True G1758417
TU2013450 lncRNA upstream 140792 59674010 ~ 59685333 (-) False G1758412
XM_021578302.2 mRNA downstream 55579 59454715 ~ 59460683 (-) True dctn6
XM_021578303.2 mRNA downstream 56369 59454715 ~ 59459893 (-) False dctn6
XM_036958298.1 mRNA downstream 75718 59375396 ~ 59440544 (-) True LOC110500772
XM_036958297.1 mRNA downstream 75722 59375396 ~ 59440540 (-) False LOC110500772
XM_021578306.2 mRNA downstream 232137 59282169 ~ 59284125 (-) True LOC110500775
trnay-gua-65 mRNA upstream 67303 59600521 ~ 59600607 (-) True trnay-gua-65
trnay-gua-66 mRNA upstream 67981 59601199 ~ 59601285 (-) True trnay-gua-66
trnay-gua-67 mRNA upstream 68657 59601875 ~ 59601961 (-) True trnay-gua-67
trnay-gua-68 mRNA upstream 69335 59602553 ~ 59602639 (-) True trnay-gua-68
trnay-gua-69 mRNA upstream 70014 59603232 ~ 59603318 (-) True trnay-gua-69
TU2013080 other downstream 320772 59192432 ~ 59195490 (-) True G1758095
TU2012593 other downstream 710437 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1473205 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 1607128 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 1613669 57902086 ~ 57902593 (-) True G1757073
TU2014036 other upstream 490549 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 589324 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 655192 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 825612 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 826207 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile