RNA id: TU2013450


Basic Information

Item Value
RNA id TU2013450
length 904
lncRNA type read_through
GC content 0.42
exon number 3
gene id G1758412
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59674010 ~ 59685333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcatgtctcagtgccctccgtgattattttttgactgcttctgtcagtttgtacaggtcatgctgattacagaagcgaagcggaagcgtgatgtctactttaaccacgtgtacgatcggtcgaaaccactctctgctatccagttcattttcagcaagtaccccagtggcctaatggataaggcactggccttctaagccagggattgtgggttcgagtcccatctggggtggatgaatgcaaattcctttggaggaagagagatcagcacgtaacACAGAGTtagatggattgaagctttccgattcaatttatagaaatgaagatttaacagggataaaaaaggagaattttgtgggcatgtctctgtgccctgagaaatgcatttttttttacaactgcttctatcagttcgtataggtcatgctgatttaacagggataaaaaaggagaatttcgtgGGCATGTCTATGTGCCCtgagaaatgcaattttttttacaactgcttctatcagttcgtataggtcatgctgatcacacatttccacagtgacttaagacactgaccgcctaatccatttattgtgagttcaagtattgttttggggtacctgaaagtggagggatgaagtggaagtgtgcagggcagttaaccaagtgGTTTAggaatcgaaaccatcctctgctatccaGTTTGCTTTTAGCAATGAAGTGCAAACAGAAGAGAAGAGCTGGGCACATAacacagaggttgatggatcgaagctATCCAATTCTACTTTTAGAAATGAAGtgtaaacagggatttttttttttaaattggagaatttcatgtgcatgtctctgtgccctccgtgattctttttttattactgcttctatcaatccatataggtcatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013457 lncRNA downstream 22341 59649009 ~ 59651669 (-) True G1758417
TU2013459 lncRNA downstream 23871 59612668 ~ 59650139 (-) False G1758417
TU2013475 lncRNA downstream 36292 59634583 ~ 59637718 (-) True G1758428
TU2013471 lncRNA downstream 51710 59619228 ~ 59622300 (-) True G1758424
TU2013384 lncRNA downstream 140792 59516262 ~ 59533218 (-) True G1758364
TU2013495 lncRNA upstream 13961 59699294 ~ 59704011 (-) True G1758445
TU2013504 lncRNA upstream 51808 59737141 ~ 59737451 (-) True trnar-ucu-120
TU2013718 lncRNA upstream 176624 59861957 ~ 59862860 (-) True G1758587
TU2013727 lncRNA upstream 195994 59881327 ~ 59881658 (-) False G1758592
TU2013724 lncRNA upstream 196089 59881422 ~ 59881710 (-) False G1758592
trnay-aua-4 mRNA downstream 1132 59672792 ~ 59672878 (-) True trnay-aua-4
trnay-gua-153 mRNA downstream 1809 59672115 ~ 59672201 (-) True trnay-gua-153
trnay-gua-152 mRNA downstream 2486 59671438 ~ 59671524 (-) True trnay-gua-152
trnay-gua-151 mRNA downstream 3163 59670761 ~ 59670847 (-) True trnay-gua-151
trnay-gua-150 mRNA downstream 3839 59670085 ~ 59670171 (-) True trnay-gua-150
trnar-ucu-93 mRNA upstream 770 59686103 ~ 59686175 (-) True trnar-ucu-93
trnar-ucu-94 mRNA upstream 1773 59687106 ~ 59687178 (-) True trnar-ucu-94
trnar-ucu-95 mRNA upstream 2776 59688109 ~ 59688181 (-) True trnar-ucu-95
trnar-ucu-96 mRNA upstream 3774 59689107 ~ 59689179 (-) True trnar-ucu-96
trnar-ucu-97 mRNA upstream 4777 59690110 ~ 59690182 (-) True trnar-ucu-97
TU2013080 other downstream 478520 59192432 ~ 59195490 (-) True G1758095
TU2012593 other downstream 868185 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1630953 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 1764876 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 1771417 57902086 ~ 57902593 (-) True G1757073
TU2014036 other upstream 338434 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 437209 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 503077 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 673497 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 674092 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile