RNA id: TU2013495


Basic Information

Item Value
RNA id TU2013495
length 335
lncRNA type read_through
GC content 0.39
exon number 2
gene id G1758445
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59699294 ~ 59704011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtgagttcaagtattgttttagggtacctgaaagtggagggatgaagtggaagtgtgcagttaaccaagtgatttaggaatcgaaaccatcctctgctatccaGTTTGCTTTTAGCAATGAAGTGCAAACAGAAGAGAAAAGCTGGGCACATAacacagaggttgatggatcgaagctAACCAATTCTACTTTTAGAAATGAAGtgtaaacagggattttttttttaaatttgagaatttcatgtgcatgtctctgtgccctccgtgattctttttttattactgcttctatcaatccatataggtcatgctgatcacagagagacacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013450 lncRNA downstream 13961 59674010 ~ 59685333 (-) False G1758412
TU2013448 lncRNA downstream 16387 59680897 ~ 59682907 (-) True G1758412
TU2013457 lncRNA downstream 47625 59649009 ~ 59651669 (-) True G1758417
TU2013459 lncRNA downstream 49155 59612668 ~ 59650139 (-) False G1758417
TU2013475 lncRNA downstream 61576 59634583 ~ 59637718 (-) True G1758428
TU2013504 lncRNA upstream 33130 59737141 ~ 59737451 (-) True trnar-ucu-120
TU2013718 lncRNA upstream 157946 59861957 ~ 59862860 (-) True G1758587
TU2013727 lncRNA upstream 177316 59881327 ~ 59881658 (-) False G1758592
TU2013724 lncRNA upstream 177411 59881422 ~ 59881710 (-) False G1758592
TU2013725 lncRNA upstream 177411 59881422 ~ 59881658 (-) True G1758592
trnar-ucu-105 mRNA downstream 1084 59698138 ~ 59698210 (-) True trnar-ucu-105
trnar-ucu-104 mRNA downstream 2088 59697134 ~ 59697206 (-) True trnar-ucu-104
trnar-ucu-103 mRNA downstream 3823 59695399 ~ 59695471 (-) True trnar-ucu-103
trnar-ucu-102 mRNA downstream 4463 59694759 ~ 59694831 (-) True trnar-ucu-102
trnar-ucu-101 mRNA downstream 5103 59694119 ~ 59694191 (-) True trnar-ucu-101
trnar-ucu-110 mRNA upstream 245 59704256 ~ 59704328 (-) True trnar-ucu-110
trnar-ucu-111 mRNA upstream 1248 59705259 ~ 59705331 (-) True trnar-ucu-111
trnar-ucu-112 mRNA upstream 2251 59706262 ~ 59706334 (-) True trnar-ucu-112
trnar-ucu-113 mRNA upstream 3254 59707265 ~ 59707337 (-) True trnar-ucu-113
trnar-ucu-114 mRNA upstream 4257 59708268 ~ 59708340 (-) True trnar-ucu-114
TU2013080 other downstream 503804 59192432 ~ 59195490 (-) True G1758095
TU2012593 other downstream 893469 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1656237 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 1790160 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 1796701 57902086 ~ 57902593 (-) True G1757073
TU2014036 other upstream 319756 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 418531 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 484399 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 654819 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 655414 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile