RNA id: TU2013748


Basic Information

Item Value
RNA id TU2013748
length 573
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1758612
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59947961 ~ 59948533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccacttcatgtttgtgtcccacttgttgttgaatcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtttatatactgtatttttataccatctattgcaccctGCCGtagccgctcggccatcgctcatccatatacctGCATGttcatattctcattcacccctttagactGTGTGTATTAGCtagttgttgggaaattgttagattacctgttagatattactgcactgtcggaactagaagcacaagcatttcgctgctctcgcattaacatctgctaaccatgtgtatgtgacataaAATTTGGTTTGCTTGATACATGTACAGTCTAAAATAAACAGTCATCCGTTTTTACACTGAACATGAAGCAtttgtgtaaaactaacaatgaaataTGACTCTTCCTCTGGCTTCAAAAGTGTAGTTGCGTGGTAAGAAACTAAAAACACAAGTTCAATCAAAACCTTCTAACCTAGCGGAGCGCTTTCGACACACCCAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013733 lncRNA downstream 28908 59918436 ~ 59919053 (-) True LOC110500790
TU2013739 lncRNA downstream 31963 59915636 ~ 59915998 (-) True G1758603
TU2013738 lncRNA downstream 34780 59912949 ~ 59913181 (-) True G1758602
TU2013729 lncRNA downstream 62297 59885268 ~ 59885664 (-) True G1758594
TU2013724 lncRNA downstream 66251 59881422 ~ 59881710 (-) False G1758592
TU2013750 lncRNA upstream 3934 59952467 ~ 59952746 (-) True G1758614
TU2013751 lncRNA upstream 6731 59955264 ~ 59955588 (-) True G1758615
TU2013753 lncRNA upstream 9296 59957829 ~ 59959033 (-) True G1758616
TU2013770 lncRNA upstream 23054 59971587 ~ 59972868 (-) True G1758631
TU2013773 lncRNA upstream 33833 59982366 ~ 59982594 (-) True G1758632
NM_001171854.1 mRNA downstream 2886 59941937 ~ 59945075 (-) True LOC100329196
XM_021578324.2 mRNA downstream 6126 59918360 ~ 59941835 (-) False LOC110500790
XM_036956478.1 mRNA downstream 42336 59896373 ~ 59905625 (-) True stl1
NM_001124195.1 mRNA downstream 42465 59896373 ~ 59905496 (-) False stl1
XM_036958299.1 mRNA downstream 67414 59864711 ~ 59880547 (-) False mfsd8
trnay-gua-290 mRNA upstream 190558 60139091 ~ 60139177 (-) True trnay-gua-290
trnay-gua-291 mRNA upstream 191897 60140430 ~ 60140516 (-) True trnay-gua-291
trnay-gua-292 mRNA upstream 192561 60141094 ~ 60141180 (-) False trnay-gua-292
trnay-gua-293 mRNA upstream 193225 60141758 ~ 60141844 (-) True trnay-gua-293
trnay-gua-294 mRNA upstream 193901 60142434 ~ 60142520 (-) True trnay-gua-294
TU2013080 other downstream 752471 59192432 ~ 59195490 (-) True G1758095
TU2012593 other downstream 1142136 58800174 ~ 58805825 (-) True G1757692
TU2011956 other downstream 1904904 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 2038827 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 2045368 57902086 ~ 57902593 (-) True G1757073
TU2014036 other upstream 75234 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 174009 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 239877 60188410 ~ 60225587 (-) True G1758915
TU2014196 other upstream 410297 60358830 ~ 60359352 (-) False LOC118942962
TU2014199 other upstream 410892 60359425 ~ 60369982 (-) False LOC118942962

Expression Profile