RNA id: TCONS_00052980


Basic Information

Item Value
RNA id TCONS_00052980
length 3461
lncRNA type sense_over
GC content 0.34
exon number 1
gene id XLOC_026233
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16064873 ~ 16068537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTCTATAATAGTGAAAACATATGTATTATAATAAAGCAAGCGCACTCTTCACccattaaagaaacaacaacacaaaaagatGCTCCCTTTACTGATCAGCTGGCCGCGGCTATTATTATCGCCCGCTGCATCTGTTTCTCGCAGGGCGGCCAGCAGTGTTGAGCAGCCGGGAAGGGTTTGCAGTCCGCCGGACACACAGCCCAACATTTCTCCTCTCTGGTGACCGAACGTCTTCCGCATCTCCCTCATCATGCTGGACGTCCTGATATTGATGTTTTTCGCCATCATCGGCCTCATGTTCCTGTCCTACATCATCTACATGCTGTGATTGTGTCGACATGGACGCGCCTCGGGACGGATCGCGAAACACAAAGGTTGGTGATGAAATGCAGCAAATAATGGAGGAAGAGCAGCGTTGTGTTGTTTTTAAGAGGGGGTTTTGATTGATGGTGTTTGTGGGTGGGCGCTTACCTAAATGTACTTATCATTAGGCTATGGTTAGAGCAAATGGTAATATTGGAATAGTTAGGTCTGTCATGTtatataatattaacatttattaatgcgtAATACGAGGAATCACACAACATGACGCGGGTTTACATTAGCTATAATAATGCTGTAGGCCTCGTGCAGATATGGAGAACCAAACCTGCTAAAAGAAGATGTGTATATATGGTGTAGGCTATAAATAAAGTTGAagtcgaattattagcccccttgtttatttttttaccccaatttctgtttaacggacagacgatttttttcaccacatttctaaacataatagctttaactcatttctaataactgatttattttatctttgtcatgatgacagtaaataatatttgactagatattttttaagacacttctatacagcttaaagtgacatttaaaggcttaattaggttaactaggcaagttattttgtaatgtttgttctgtagactatcaaaaaacaatatagcttaaaggggctaataattatgtctttaaaatggtgtttaaaaaataaaaaaatctgcttttattctagccaaaataaaacaaatatgactttctccacaagaaaaaaatatcagacatactgtggaaaccCTTAAATGCCTCAGGCAAATCTGTGAAAAACTTGTCTTCAAGGAGGTCAATTGAAGTAAATACAAAAATCAGTATGTGCAGTAAAGTATGATGAATATGTTAGTAATCTATCAAATTAAATTTAgggtaaaattaagtttttattcacctaaacccaactgtccaCCTATGTGGACGCCAGAGGAGTCAGATTGCATAAAAGtcctttttttctgtaacctgctAATATATCTATTCTATTTTTCAAAGATGTTATCAATTGTCGTATATTGTTATAAAACAGACAATtaacaaatacatcaacataAATAGTCGTTTAAAATGACATATTACATATGCCCTGTGTCCTGACTGTTTTAAGGGCTTTTACacgaaaaataataatttcctgcGTGCTGTAAAGAACCCAGTTTCAACTAAAAATACTGTAACTGAGATGATTTAAAAAGAAGTAAGATAAGGATGAAATAATAAGTTGTTACAATCAGcattacagttgaagtcgaattattagccccctgtttattttttcccaatttctgtttaacggagagctgatttgttcaacacatttctaaacattatagttttaataactcatttcttataacagatttattttatctttgtcatgatgacagtaaataatagtttactagatattttcaagacacttctatacaacttaaagtgacatttaaaggcttaactaggttaattaactaggcaagttattgtataacgatggtttgttctgtagactatcctgaaaaagatatagcttaaaggggctaataattttgaccttaaaatggttttcaaaaaaataatactGACTTTTATTCTATCGGAAATTAAAGCAAATAAGCTTTTCTCTtgtagaaaaaaacattatcagacatactgtgaaaatttcctttctctgttaaacatcatttaagaaatatttaaaaatgaaaaaaaataataataataaattcaaaagggggctaataattctgacttcaactgtatataactgctgttattattgttcctacaatatgcattttattgttattatattgtaCCATTAttgtttttcaagagttcacacttagatactgtttgacaacttgttagcaagttagcaggtttggcatgctgtcccgggagagaaccctgagttcggagatagttgagcccagggctcctgccaggtccataaagcatgtgaggggagtacgaggtcaggtgttctcgagagctcccctcggcaaaagaggaaaggaggagaaggggtggatggggggtttcttcggaaaacgaagataagggagtagatcttagctaggttacttatagtgagtttggatcaatccgattggctatagccaatgagtgtagatgagtggccagctgcagtcaatcaaatcacgtgctcctctcgaaattagtttgtgaaacttcatttaataaatgagctGATATGAATAGAATAACAGGCCATTAAAGAAACTATATTCCATATTGTCAGCTGACTTTGTCACATTGTTGCATGGTGTCTACGTATGTGGACAgttaaataattgttaaataaaactaaattttgtaaaaatgaaaatggattttattttagtgtcatattaaatttatttaaaaaataataaaacaatgtttttcatGATTTATGCATGAAAgggttaaaattgtgtttaaaaaaatataaaactgcttctattctagccaaattaaaacaaataagattttctccaaaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaacattatttgtgaaatatttaaaaaagaacataaaatattattgttttatttatttttaggtatttatttattagtttgttgcAGGTTTGTTTCTCCATATTGTATAATATCTGtttgtgtttataataataatatcattcatATGTGTTATGTTGCATCTTTCAGGAAGAAGCTCTGTCTCTCTTCTTTCTGATATATGGAGGAGATGAAATGTGAACACACTGGAAGATTCAGGATACAGGATGAGACTTCCTCCTTCCCTCTGTCACACAAACACTGTTCCTGTAGGGTAGTAATCAACCCCAAAAGCTCCGCCTGAATGATGTTTTCCTGCCTTTTTTATTTGTACACTATTGAAGTATATTTTCCTAATGTCTGAAACACTAGCATGTGATCTGCAGCTGTCTGGGTGTTCATTTTCCTGCCTGTTGTTTCTGCATACTACGTTAACAGTGTTTATATCAAATGCATGTATTTTATGCCAGTGGCTCTTCATAAAGCAGctgtttatttagaataaaaagcTTTTGTGAGGATGAAATGGCC

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052978 lncRNA downstream 358106 15685784 ~ 15706767 (-) False XLOC_026225
TCONS_00052450 lncRNA downstream 361209 15697117 ~ 15703664 (-) False XLOC_026225
TCONS_00051144 lncRNA downstream 429365 15627269 ~ 15635508 (-) True XLOC_026221
TCONS_00051143 lncRNA downstream 439353 15618257 ~ 15625520 (-) True XLOC_026220
TCONS_00052977 lncRNA downstream 439384 15618257 ~ 15625489 (-) False XLOC_026220
TCONS_00051169 lncRNA upstream 66432 16134765 ~ 16141700 (-) True XLOC_026235
TCONS_00051174 lncRNA upstream 115038 16183371 ~ 16191813 (-) True XLOC_026236
TCONS_00052982 lncRNA upstream 164176 16232509 ~ 16234631 (-) False XLOC_026237
TCONS_00052983 lncRNA upstream 164176 16232509 ~ 16250605 (-) False XLOC_026237
TCONS_00052984 lncRNA upstream 164176 16232509 ~ 16265209 (-) False XLOC_026237
TCONS_00051162 mRNA downstream 9410 16044680 ~ 16055463 (-) False XLOC_026232
TCONS_00051163 mRNA downstream 9441 16045041 ~ 16055432 (-) True XLOC_026232
TCONS_00051161 mRNA downstream 25254 16018202 ~ 16039619 (-) True XLOC_026231
TCONS_00051160 mRNA downstream 53905 16003122 ~ 16010968 (-) True XLOC_026230
TCONS_00051158 mRNA downstream 64705 15990547 ~ 16000168 (-) False XLOC_026229
TCONS_00051165 mRNA upstream 4633 16072966 ~ 16110100 (-) False XLOC_026234
TCONS_00051166 mRNA upstream 4639 16072972 ~ 16110351 (-) False XLOC_026234
TCONS_00051168 mRNA upstream 66043 16134376 ~ 16142057 (-) False XLOC_026235
TCONS_00051170 mRNA upstream 88787 16157120 ~ 16227490 (-) False XLOC_026236
TCONS_00051171 mRNA upstream 93145 16161478 ~ 16227683 (-) False XLOC_026236
TCONS_00051152 other downstream 358106 15697131 ~ 15706767 (-) True XLOC_026225
TCONS_00051151 other downstream 367573 15694215 ~ 15697300 (-) False XLOC_026225
TCONS_00051149 other downstream 405266 15655591 ~ 15659607 (-) True XLOC_026223
TCONS_00051145 other downstream 426761 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051114 other downstream 1176705 14888052 ~ 14888168 (-) True XLOC_026205
TCONS_00051167 other upstream 12327 16080660 ~ 16109858 (-) True XLOC_026234
TCONS_00051199 other upstream 2084154 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051201 other upstream 2118997 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051202 other upstream 2134616 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051220 other upstream 2730098 18798431 ~ 18805221 (-) False XLOC_026264

Expression Profile

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