RNA id: TCONS_00004872


Basic Information

Item Value
RNA id TCONS_00004872
length 729
lncRNA type retained_intron
GC content 0.32
exon number 3
gene id XLOC_002618
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9534615 ~ 9538335 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcacaacactgagatgaaggcgaagtcaccatgaaaagttaaacgtttaccgttaagctacagtaattgatgttgaaaaactgatgcaaccaatcactcctcacttgattattcaaggtaataaaaaaaaaacatctggtgttaaaacagccacggctatgctatttgcctaccaagtgctgagtaaatattagacaaacatttttttctataactgttttctttgtgtttattagcaattttactgggcatatgtgtttgtttttttttcaaacagcctggaaactgtaagtttagttcaatatgttattttatgctattcatttttgtcttaacatggaatgcatgttgaagctatcgttttatagtgggaaaatgtaaaagagaatcactaaatacaatggcataatgattctgcttgttcaaagaaggtacttgatttagttttcctcaagcgacacatcagtttttatgactattgcttgacacttgaattgaagggacagttcacccaaaatgaaaataatagcatctttggcatcctccacttgtttcaaaatagttatatatttaatttgttccgttgaacacaaactcgtattttttaaagaaatttggtttaaatatggatgtcaatagttactggttactaacattcttcaaaatatctgcttcagtgtttaacagaaattcaaactagtttaaaacacgtggagtaaatagtggcaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136297

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004864 lncRNA downstream 266931 9264673 ~ 9269711 (-) True XLOC_002614
TCONS_00004863 lncRNA downstream 267393 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00005750 lncRNA downstream 268931 9266053 ~ 9267711 (-) True XLOC_002615
TCONS_00006002 lncRNA downstream 344887 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00006001 lncRNA downstream 390000 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006003 lncRNA upstream 108387 9646362 ~ 9661692 (-) True XLOC_002619
TCONS_00004878 lncRNA upstream 377433 9915408 ~ 10016348 (-) True XLOC_002620
TCONS_00006004 lncRNA upstream 723370 10261345 ~ 10288666 (-) False XLOC_002621
TCONS_00006005 lncRNA upstream 735754 10273729 ~ 10278533 (-) True XLOC_002622
TCONS_00006006 lncRNA upstream 749480 10287455 ~ 10288683 (-) True XLOC_002621
TCONS_00004866 mRNA downstream 126574 9397305 ~ 9410068 (-) True XLOC_002617
TCONS_00004865 mRNA downstream 190282 9305050 ~ 9346360 (-) True XLOC_002616
TCONS_00004862 mRNA downstream 266909 9247593 ~ 9269733 (-) False XLOC_002614
TCONS_00004861 mRNA downstream 344192 9190065 ~ 9192450 (-) False XLOC_002613
TCONS_00004860 mRNA downstream 345811 9186651 ~ 9190831 (-) False XLOC_002613
TCONS_00004874 mRNA upstream 296921 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004875 mRNA upstream 297704 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004876 mRNA upstream 299317 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004877 mRNA upstream 346428 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004882 mRNA upstream 1026472 10564447 ~ 10607118 (-) True XLOC_002624
TCONS_00004859 other downstream 394963 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 447006 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004855 other downstream 519805 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004848 other downstream 858814 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 1576804 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004879 other upstream 781333 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other upstream 791489 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004903 other upstream 2223405 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 3767090 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 4069052 13607027 ~ 13607143 (-) True XLOC_002646

Expression Profile

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