RNA id: TCONS_00052988


Basic Information

Item Value
RNA id TCONS_00052988
length 666
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_026252
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18109375 ~ 18292217 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCCATTCTGTCTGTAGGAAGTCTCCATGTTGCTGCTCTCTTGAAAATGGCTTTGTTTAAGCCTCTTACGGGGTCATGGATGAGGCCCTGTCGGCCAGCCTGAGGTAGCAGCCATCGGAGGCCCACCCTAGGGAAAAAGCATGTGTTATCCCTCTCCCTCCCATCCAGCTCCAGTCAAAAGTTCAAAGCCGTGCCTTTAAAACAGAGAGTGGTGTGTGTGCTGGCTCCCCTCCCATGCAGGGTCACAGCTTGGCTGGAGTTGGAGCTGGGGAGATGAGAGGGCCGGGCGGCCGGGGGGAGGCGATGGTTCTCACATGAAAGCTCTGCAGCCGAGGAGAGAGTCCCAGACCCAGACACAACACAAGGGATCAGACTGGCCCCCCCATCCCCCTTAGCCGCAACACTTCCCACCAAAGAACAGCTGGAATGTGACCTGTTCCAGAACCAAGGCCAGGACTGACTGACAATAGAATCCATCGGGATTGGGGGTGGGATCGCTCTTCTATCATAAACTATGTCCCTCCTTATCAAAGCCCGGTCAAAAACTTCTCACAAAGACCACATACTATACAAGCGGAAAGTTTTGCCAACATGAACAATGATGTAGATGACACTTTAAACGGGAGTTTGAGATGCTAATGAACAGAGCTGTAACTACATggtta

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0033036 macromolecule localization biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051196 lncRNA downstream 81674 18023975 ~ 18027701 (-) False XLOC_026250
TCONS_00052451 lncRNA downstream 165140 17943289 ~ 17944235 (-) True XLOC_026249
TCONS_00052987 lncRNA downstream 505226 17602486 ~ 17604149 (-) True XLOC_026246
TCONS_00051192 lncRNA downstream 1206095 16900243 ~ 16903280 (-) True XLOC_026245
TCONS_00052986 lncRNA downstream 1445347 16632110 ~ 16664028 (-) False XLOC_026241
TCONS_00052455 lncRNA upstream 36568 18177198 ~ 18178437 (-) False XLOC_026252
TCONS_00051206 lncRNA upstream 201923 18342553 ~ 18373604 (-) True XLOC_026254
TCONS_00051208 lncRNA upstream 238884 18379514 ~ 18384445 (-) True XLOC_026255
TCONS_00052993 lncRNA upstream 320727 18461357 ~ 18464993 (-) True XLOC_026257
TCONS_00051223 lncRNA upstream 831778 18972408 ~ 18974640 (-) True XLOC_026265
TCONS_00051198 mRNA downstream 62225 18038972 ~ 18047150 (-) True XLOC_026251
TCONS_00051197 mRNA downstream 78437 18023975 ~ 18030938 (-) True XLOC_026250
TCONS_00051195 mRNA downstream 237515 17868841 ~ 17871860 (-) True XLOC_026248
TCONS_00051194 mRNA downstream 237529 17867126 ~ 17871846 (-) False XLOC_026248
TCONS_00051193 mRNA downstream 393053 17715685 ~ 17716322 (-) True XLOC_026247
TCONS_00051200 mRNA upstream 44986 18185616 ~ 18189283 (-) False XLOC_026252
TCONS_00051203 mRNA upstream 129413 18270043 ~ 18274691 (-) True XLOC_026253
TCONS_00051204 mRNA upstream 162777 18303407 ~ 18373425 (-) False XLOC_026254
TCONS_00051205 mRNA upstream 162777 18303407 ~ 18373604 (-) False XLOC_026254
TCONS_00051207 mRNA upstream 235639 18376269 ~ 18384501 (-) False XLOC_026255
TCONS_00051167 other downstream 1999517 16080660 ~ 16109858 (-) True XLOC_026234
TCONS_00051152 other downstream 2402608 15697131 ~ 15706767 (-) True XLOC_026225
TCONS_00051151 other downstream 2412075 15694215 ~ 15697300 (-) False XLOC_026225
TCONS_00051149 other downstream 2449768 15655591 ~ 15659607 (-) True XLOC_026223
TCONS_00051145 other downstream 2471263 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051199 other upstream 11857 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051201 other upstream 46700 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051202 other upstream 62319 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051220 other upstream 657801 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051231 other upstream 1192874 19333504 ~ 19333631 (-) True XLOC_026269

Expression Profile

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