RNA id: TCONS_00052991


Basic Information

Item Value
RNA id TCONS_00052991
length 1440
lncRNA type read_through
GC content 0.41
exon number 9
gene id XLOC_026252
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18109375 ~ 18292217 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGAAGTGACCAAATTTTTGGAGGGAAATCACTAAATTAACAGAGCAAACACCCCGTTTGTGTTTTCAGCACCTTGGACAGCGGCCAAACAGAAGCGCACGCCGCTGAGTAAGTGCGAGAGGTTCTCCTGCTGCTGCACTGCCATTGGTCAGATTTTCCGAGGTCGTGTGACTCATAACGGAGCCAGAAGGCAGAAACACAGTGATGAGCTCAACCGTGACTGAACTGGGCTGATCAGACAGACTGAGCTGCACCTGCATCCCTGCGGTGGACACGTGTGACGTCACTGAGCTGATGAATGTGGATTAAACACTGGCTGATATTAAACCACACAAGGGAAGATGAGGCAGACACCCTTGGTTGTACCTGTAGTGGCCCATTGGCTTCAACAAGCAAGACATGGAGAGTTTCTGACagaaaaaggaaactgaGTTTTGGAAAcaattgaggTAGCTGGTGTTGTGCGAACACTTCCACTTATGCGGTGCAGATGGGAGACGTTCCCAATGCCACAGGAATGAAACAGCACTGCTGCATCCAGCTTTCATTTCTACAAAGAAGGACGAGCTCTGACTTCAGGCTGCACacagAAGTTTCAAAGAAGTCCTAGAAGATGAGCATAGAGGACTTATCATCCAAGCAGATCTGGAGCAGCCATTCTGTCTGTAGGAAGTCTCCATGTTGCTGCTCTCTTGAAAATGGCTTTGTTTAAGTGGGCTGTTTGTGAAGCTTCATCTCATCAACATTTCAATTCTGTTGCAGTGGgctctttttttcaattttCTGGAATACAAAAGGACAGAGGACAGGCGCAGTAATTCACATGGGGGTGTAGAGCTAACACCACTTCACAGAATTGCCTTTTGTTCAGTGTCTGCTGGATCAGAACACCCTCAGATTGATTCTTCCTACaactccacacacaaaaaaagagaagaaaaaatttGTCTTTTTGTTGCTTTCCCATAAGAGTAGATGGTTAACAACCGCCTTGTTCTTTTAAGAGTAGAAAGGTGTATTCTGAGTGAAatcttttaaagtgtttttacaaatcaataaacagttgaagtcagaattatgtattagcccccctttgggttttttttttctatctttcatatttcccaaatgatgtttaacagagcaaggaaactttcacagtatgtctgataatgatttttcttctgaagaaagtcttatttgttttatttcggctagaataaaagcagttaaaaacattttaaggtcaaaattattagccccttcaagcaaatttttttcaattgtctacagaacaaaccatcattatacaataatttgtctaattaccctgtcttgcctagttaccctaattagttaagcctttaaaatgtcactttaagctgtatagaagtgtcttgaaaaatatctaataaaatattatttactgtcatcatggc

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0033036 macromolecule localization biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051196 lncRNA downstream 105270 18023975 ~ 18027701 (-) False XLOC_026250
TCONS_00052451 lncRNA downstream 188736 17943289 ~ 17944235 (-) True XLOC_026249
TCONS_00052987 lncRNA downstream 528822 17602486 ~ 17604149 (-) True XLOC_026246
TCONS_00051192 lncRNA downstream 1229691 16900243 ~ 16903280 (-) True XLOC_026245
TCONS_00051187 lncRNA downstream 1473036 16643253 ~ 16659935 (-) True XLOC_026241
TCONS_00051206 lncRNA upstream 50336 18342553 ~ 18373604 (-) True XLOC_026254
TCONS_00051208 lncRNA upstream 87297 18379514 ~ 18384445 (-) True XLOC_026255
TCONS_00052993 lncRNA upstream 169140 18461357 ~ 18464993 (-) True XLOC_026257
TCONS_00051223 lncRNA upstream 680191 18972408 ~ 18974640 (-) True XLOC_026265
TCONS_00051229 lncRNA upstream 895106 19187323 ~ 19193940 (-) True XLOC_026267
TCONS_00051198 mRNA downstream 85821 18038972 ~ 18047150 (-) True XLOC_026251
TCONS_00051197 mRNA downstream 102033 18023975 ~ 18030938 (-) True XLOC_026250
TCONS_00051195 mRNA downstream 261111 17868841 ~ 17871860 (-) True XLOC_026248
TCONS_00051194 mRNA downstream 261125 17867126 ~ 17871846 (-) False XLOC_026248
TCONS_00051193 mRNA downstream 416649 17715685 ~ 17716322 (-) True XLOC_026247
TCONS_00051204 mRNA upstream 11190 18303407 ~ 18373425 (-) False XLOC_026254
TCONS_00051205 mRNA upstream 11190 18303407 ~ 18373604 (-) False XLOC_026254
TCONS_00051207 mRNA upstream 84052 18376269 ~ 18384501 (-) False XLOC_026255
TCONS_00051209 mRNA upstream 112919 18405136 ~ 18410968 (-) True XLOC_026256
TCONS_00051210 mRNA upstream 280062 18572279 ~ 18575868 (-) True XLOC_026258
TCONS_00051167 other downstream 2023113 16080660 ~ 16109858 (-) True XLOC_026234
TCONS_00051152 other downstream 2426204 15697131 ~ 15706767 (-) True XLOC_026225
TCONS_00051151 other downstream 2435671 15694215 ~ 15697300 (-) False XLOC_026225
TCONS_00051149 other downstream 2473364 15655591 ~ 15659607 (-) True XLOC_026223
TCONS_00051145 other downstream 2494859 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051220 other upstream 506214 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051231 other upstream 1041287 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051249 other upstream 1811842 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051254 other upstream 2428623 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051258 other upstream 2679802 20972019 ~ 20982706 (-) True XLOC_026287

Expression Profile

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