RNA id: TCONS_00051223


Basic Information

Item Value
RNA id TCONS_00051223
length 1602
lncRNA type lincRNA
GC content 0.36
exon number 3
gene id XLOC_026265
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18972408 ~ 18974640 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACatcgctatacaaataaaggtgaattaaattgaattgaatttttgtgCAAAACAACAAAAGGTGGGCCCTATAGTATCTGGTAGTATAGTATacctcagagatgcaatgtcagacacaatgcactcaatggagctagtgacgtcactgtgaggggtagggttaggtgtggGCATTAAAAAACATTGCATGCAGGCCAACAGCACCAAGCCTGCATCTTGACCTCTCTCCAAAAGAAAAGTGAAAAATACAAAAGATGTGTAATGAAAACTTTAGGTGTTATAGTTCTGGGgtccatttatttgtattttgtagaTACTGAcattcaaaatgttttgtttcataTAGTGGCGTTTCACATTTccactttttacatttacatttagtcattttacatttagtcatttagcagacgcttttatccaaagcgactctTTACAATTCCAATTGTCTCATTACAAATTCAGCTGAATGGCATTGTGCCGGCATGTGGCAAAATAAACGCATACTTATCTGGCCATTTAACTTTAAACTGTCTATTCTCtgaatcaagattttttttctgtgagaCCAACATCTTCATACAATCACACGATCGCTTTGCTGCAGTGCATTAAAGCAGGTACATGCATGATTAGACCGCTTGATCACTTGAAGCCTTGTATGAGCCTTGTAAGCACTGGGTGTCATGACAGAAGAGTTAGTAGGAACTTGAATATTAATAACTTTGAATATTTTGCCATTGAATTTATTTCAGcctgtattttttacaaaattacaaacAACTAAACTTTGTAACCCTCGATACACAAATGTATTATACGCTTTTAATCAATGGACCAGATGCTCAGAAGTCTAAATTCCTCCAAAGAGAGAGAAGATACAACAACAGTGAAGGACTCGGACACAGAgGGTTTTATGGCTATATCACTAATAAGGTGTTTCCAAAGAATCCACTTAATGGTaggctcgccagtccaactccacaatGAGACACGccgatggaagttgagacaatccaaatccagaaaagagttcaaacttcaattaattcgaatccagagcagatcacatccagcaactgacgtcaatagaacatctcaccgatgaaaaaacagaagaagatgcacaaacgaacaaaaccaaacaaaaaaaaaaaacctggccaaggaaatcattcaaaatcaaaacgaaacaaacaggaaaactccaggtggcactcgtgtgcagatttcactctcagagacaaatcttgtttttttctctctcaatccttcattaaaaatatatgattgaaATCATGTCAGCATCTTATTAATGGTCAATTTTCACAGTTAATacgcattaaaacattaaaaaatgtaaatctaatagttatattactgttattaatataAAGACTTACATCTCTGCTTTCCCTtgcgaacactgaatcaccatagcaacggtaaacacaagctaacagacaagcgagatttgttattgtttggaaagctgatctgctgctatagtgtaaggcacgatgatgtcattctaaagcactattcccttgaatgctgtataatactctattataaattatttatataagtaaataatttta

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194443

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052993 lncRNA downstream 507415 18461357 ~ 18464993 (-) True XLOC_026257
TCONS_00051208 lncRNA downstream 587963 18379514 ~ 18384445 (-) True XLOC_026255
TCONS_00051206 lncRNA downstream 598804 18342553 ~ 18373604 (-) True XLOC_026254
TCONS_00052455 lncRNA downstream 793971 18177198 ~ 18178437 (-) False XLOC_026252
TCONS_00052454 lncRNA downstream 831774 18133385 ~ 18140634 (-) False XLOC_026252
TCONS_00051229 lncRNA upstream 212683 19187323 ~ 19193940 (-) True XLOC_026267
TCONS_00051230 lncRNA upstream 232594 19207234 ~ 19216723 (-) True XLOC_026268
TCONS_00051237 lncRNA upstream 585342 19559982 ~ 19561039 (-) True XLOC_026273
TCONS_00051238 lncRNA upstream 838608 19813248 ~ 19814819 (-) False XLOC_026274
TCONS_00052994 lncRNA upstream 838618 19813258 ~ 19816599 (-) False XLOC_026274
TCONS_00051221 mRNA downstream 167114 18800407 ~ 18805294 (-) False XLOC_026264
TCONS_00051222 mRNA downstream 167183 18801004 ~ 18805225 (-) True XLOC_026264
TCONS_00051219 mRNA downstream 179874 18774511 ~ 18792534 (-) True XLOC_026263
TCONS_00051218 mRNA downstream 179916 18774511 ~ 18792492 (-) False XLOC_026263
TCONS_00051216 mRNA downstream 216332 18744296 ~ 18756076 (-) False XLOC_026262
TCONS_00051224 mRNA upstream 30547 19005187 ~ 19133003 (-) False XLOC_026266
TCONS_00051226 mRNA upstream 30548 19005188 ~ 19091024 (-) False XLOC_026266
TCONS_00051225 mRNA upstream 30548 19005188 ~ 19091024 (-) True XLOC_026266
TCONS_00051227 mRNA upstream 177582 19152222 ~ 19200651 (-) False XLOC_026267
TCONS_00051228 mRNA upstream 210397 19185037 ~ 19200571 (-) False XLOC_026267
TCONS_00051220 other downstream 167187 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051202 other downstream 680203 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051201 other downstream 681047 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051199 other downstream 816384 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051167 other downstream 2862550 16080660 ~ 16109858 (-) True XLOC_026234
TCONS_00051231 other upstream 358864 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051249 other upstream 1129419 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051254 other upstream 1746200 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051258 other upstream 1997379 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051260 other upstream 2019864 20994504 ~ 20998360 (-) True XLOC_026288

Expression Profile

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