RNA id: TCONS_00051234


Basic Information

Item Value
RNA id TCONS_00051234
length 1910
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_026271
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19487707 ~ 19495814 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtcagtcagtcaggacACACCAGAACTGaagaatgatgtttaacacagttTTCTGTGTGGCTGGAGCTGTACTTCTCAACATTGCAGGCTGTCTGGGTCAGTCAGATGTCTGTGGTCGAGCGCCTCTCAACACCAAGATTGTTGGTGGACTGAATGCAACAGAAGGGTCTTGGCCCTGGCAGGCCAGCATTAACTTCAAGTCAACAGGACAATTTTTCTGCAGCGGGTCACTAATCAGTGAAAGATGGGTTTTGACAGCTGCTAGCTGCTTTCAGAGAATTAATGTGTCTGACGTTGTGATCTACTTGGGACGTCTGACCACAAATGGCTCAAACCCATATGAGATACCCAGGACAGTGATTCAAGTCAGTGTCACCGAAGATATAGCACTTGTCCAGCTCTCTTCCTCCGTGACTTTCACTGATTACATTAGGCCAGTGTGTCTGGCTGCTGCTGGTAGTGTGTTTGTTGACGGGACAGAGAGTTGGGTCACAGGATGGGGCTCGACTAGTTCGACAAATGTAATCCTTTCTGATATGCTGAAGGAGGTGGAGGCCCCTATTGTGAACAACATTGAATGCAGTAATATCAATGGAATCACAAATTTAGACAACGTAATATGTGCTGGATTTGTAAATGAGACAGGAAAAGCCCCATGTTGGGAAGATTTTGGAAGCCCACTGGTGACTAGACAGGGCTCCCAGTGGATTCAGTCTGGAGTTGTAGTCTTTACGTTTTGTGGTCAAAATGGCTTTCCTACTCTATATGCCAGAGTGTCTGAATATGAGGAGTGGATCCGCAACTACACCAGCAGCAGTCTGCCTGGATTTCTCTCATATCCCGTCATTTACACTTTCATGAATGAAGGATCAGTCAACGTCCCCTCATTTCTTGTTCTCACATTCTCCATCATCACTCTCTTCATCTCACGCTTCTTTTGAAGACTGAGTTATGATGATTTCTGGGATGTGGTACTATAATTATTACAATACttcttataattataatatatacttcTAGAGCAATTCCTGTTTTTACTTAAGATTAATTATTAGGGAGAGATTTTGTTggtgtttaatgttttattttgagattTCTATATCTTTAAAGTTTctacacatttttgttttatttgttttatttttccttcaTTCTCTGCGTTTGACAGTTCATTACAAAAGCATATGTTTGCCCTCTTTCTTTTTAGTATAGGTCACAATTCACTGCATTAACAAACCATCAACTAACACCACTATCCTAATAAACCACAAATTAGCTGATTATTAATAGTTACGGTTGAAGTTGGCATGACAATAAGATTATCAGTTATAAATACTAattaacagttaatatcttaataataaacaggtaataagccagtagtcaGCATGAATTGTGATCTAAACTAAAGAGTTACCCTAAAATCACGTTTTACCAGTGGATAATATCAAATGCTAGATTTAAAAACATCAATAGCTCACAAATAATTACCTCCATCATAAGCATCTTTATCCATGCTGTGACCACATATAATCAAATAAGTGTATCAGCAGATGGCGCCATAAatcaaatatatcaaaatatattttacctTTAACTGGCGAGGATCACTCAGTCTTTTTTTGTGTGAGTTTAAAGATTTTtaagaaatgtattttcttttttctttgcttgAGCTCTTTTGCTTGAGCTTTCTTAGATTTTATTGATGTGGGCTGACCCAAGACAGTAAAGTGCTTTATTAAACTTctacctaacacacacacacacacacacacacacacacacacacacaaacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162248

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051230 lncRNA downstream 270984 19207234 ~ 19216723 (-) True XLOC_026268
TCONS_00051229 lncRNA downstream 293767 19187323 ~ 19193940 (-) True XLOC_026267
TCONS_00051223 lncRNA downstream 513067 18972408 ~ 18974640 (-) True XLOC_026265
TCONS_00052993 lncRNA downstream 1022714 18461357 ~ 18464993 (-) True XLOC_026257
TCONS_00051208 lncRNA downstream 1103262 18379514 ~ 18384445 (-) True XLOC_026255
TCONS_00051237 lncRNA upstream 64168 19559982 ~ 19561039 (-) True XLOC_026273
TCONS_00051238 lncRNA upstream 317434 19813248 ~ 19814819 (-) False XLOC_026274
TCONS_00052994 lncRNA upstream 317444 19813258 ~ 19816599 (-) False XLOC_026274
TCONS_00052456 lncRNA upstream 317444 19813258 ~ 19820807 (-) True XLOC_026274
TCONS_00052995 lncRNA upstream 475867 19971681 ~ 19973620 (-) True XLOC_026276
TCONS_00051232 mRNA downstream 119272 19364948 ~ 19368435 (-) False XLOC_026270
TCONS_00051233 mRNA downstream 120626 19365879 ~ 19367081 (-) True XLOC_026270
TCONS_00051227 mRNA downstream 287056 19152222 ~ 19200651 (-) False XLOC_026267
TCONS_00051228 mRNA downstream 287136 19185037 ~ 19200571 (-) False XLOC_026267
TCONS_00051224 mRNA downstream 354704 19005187 ~ 19133003 (-) False XLOC_026266
TCONS_00051235 mRNA upstream 11601 19507415 ~ 19517462 (-) True XLOC_026272
TCONS_00051236 mRNA upstream 61790 19557604 ~ 19561058 (-) False XLOC_026273
TCONS_00051239 mRNA upstream 355123 19850937 ~ 19899914 (-) True XLOC_026275
TCONS_00051242 mRNA upstream 529895 20025709 ~ 20040636 (-) True XLOC_026278
TCONS_00051243 mRNA upstream 546093 20041907 ~ 20063671 (-) False XLOC_026279
TCONS_00051231 other downstream 154076 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051220 other downstream 682486 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051202 other downstream 1195502 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051201 other downstream 1196346 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051199 other downstream 1331683 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051249 other upstream 608245 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051254 other upstream 1225026 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051258 other upstream 1476205 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051260 other upstream 1498690 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051287 other upstream 2121106 21616920 ~ 21617040 (-) True XLOC_026301

Expression Profile

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