RNA id: XM_021578633.2


Basic Information

Item Value
RNA id XM_021578633.2
length 2971
RNA type mRNA
GC content 0.47
exon number 2
gene id zic5
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 2484121 ~ 2489060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATGTTCTGTCAATCGCTTGAGGACTGAGTGGGAAAAGGAACAAGCAGAGTTAGAGGCAGGACAAAAGAAGTTATATAGTTCgcttatatacatatattttaatGTTTTAGAAAAGCGTGATGGTGGGGGAGAAACAATAGCGGTGGATGGACTTGACAGTGTAGTTATGGAGCCCCCTTTGAGCAAGAGGAATCCGGCGATAAGATTAGCGGATTTGGCAGCGACTCAACCTCTTCCTCATCAGAATATGACAGGCTTCCCGGGGCTAGGGGTGCATCACCCTCACTCCCACCATGCCCACCACCACCCTGGGGAGATGGGCAACGACCCCGGAGTGGCACTCACTCCATTTGGACCCGAGCACATGGCACAGACAAACGCTCTCAAACTTAGCCCCTCTCAGCACATTCAGAGCCATCACGAAGCCCAGACCGCTGCAACGGCAGCATCCTTCACTTCTGCTCAGACCACAGTAGGTTTCCCCGTGGCTCCTCACCCCCACTCAGGCTACTCTAGCAGCAGGGACTACATCCTCAGGAGAGAACTCTCAGCCTCGGCTATGCATGCACTTGGCGACCAGCATAGTTCCGCCTCCTCCCCTCATCACCATGGCATGTTCATCGCACCAACAGGTGCTTATGGGCACGCCGAAACTGGTGCCCATCCACTTTTCTCTGGACTCCACGACCAAGCGGCCCCAGgtgcccaccaccaccaccaccaccatgcccTCAACGGGCAGATGCGTCTGGGTCTACCGGGGGACATCTACGGCAGGCCAGAGCACTTTGGCCACAGGCCCGAGCACTATGGACCCTCTTCTATCCACAGCTACAACTCCATGAACCTCAATGTGAACATCGCTTCTGCTCCTCACGGAGCCGCGGGGGCATTTCTGAGATACATGAGGCAGCCCATCAAGCAAGAGTTAATCTGCAAATGGATTGAACAGGATGAAACTTCAAAGAAGCCCTGCTCCAAAACGTACAGCACCATGCACGAGCTGGTCAACCATGTCACGGTGGAGCACGTCGGGGGACCGGAGCAAGCCAGTCATGTCTGCTTCTGGGAGGAATGTCCGCGGGAGGGGAAAGCTTTTAAGGCGAAATACAAACTGATAAACCACATCCGAGTTCACACGGGAGAGAAACCATTCCCTTGCCCTTTCCCCGGCTGCGGAAAAGTTTTCGCTCGCTCGGAAAATCTAAAGATTCAcaaaaggacacacacaggggagaagcctttcaaGTGCGAGTTTGATGGCTGCGACAGGAAATTCGCCAACAGCAGCGACCGGAAGAAGCACTCACACGTCCACACGAGTGACAAGCCTTACTACTGCAAAGTCAGAGGCTGTGACAAGTCCTACACGCACCCCAGCTCGCTGCGAAAGCACATGAAAGTCCACTGCAAGTCGCCCCCGCCCCCTTCTGCCAACGCTTCATACCATTCCTCTACGAACCCTCTTGGCGCGCCCCTTTCGCCCGCCTCCGAACCGCACAGGAACCGGTCCGCGAACCTCTCGCCTCAGGTTACCAACCTCAATGAGTGGTACGTGTGCCAGGGGAGCGGGGGACCCAACCATCTCCACACCCCCTCCAGCGATGTGCCAACTTCGGACTCAGACGAAGAGGACTCTTTCAGAAATTCAGACCCGAGGACAATGCTCTAATGTTTACAAACATAACACATTGCGTTTATTCCCCAAATTATCTCCCAACTGGTTAGAAGTGTAGTAAGAACTACCTGCATGGGGACTGTACTGACTGTAAGCATATAAGTGGGACTTTATGGAGCAAGAAATAGCGCCGCGGATGTCAGATGATGATGAAGAACAACAGCCAATAAAACGTGCCCTCTCTGTTCGCTTTCTAAAGAGCCGAATGTATCAACATCTCAACAAGTCTCAATATAGAAAAGCTACAATCACCAGTATTATTTGAGAAAAGGAAATCATATTCATTTTGAAAGCTTTATTATTTAAATAGGCTATAGAGAGGACCAAGAGAAGCCTAAATATACTgagaacagaaatacaatgtcACCAGTAAGGATAAGTCTTTGAgaaaacacatgcacacatatgCAGGCTACATTTACATGCCTGCATCGTTTAACACGGATGAATTATGCTTACATTGACATTGTCCATATGATCGCAATCCCTGGCAATGTAACCTGTTTTATTAATCAATGTCCAATCCCAGACAGAGGGAAGAAATAGACGTTGCTCATGCAAAGTACATGAACATTATCAACAGCCCATGAACACTATAATATTGCCTAAACATCCAAGAATGGGGGAGTGGCATTCCATTTTTCTTACGTATATCTCACAGTAGATGCGAGAACTAATGTAGTCTAAACATCCAATTGAACATCGAACACCTGCAGATAGCGACAGACATTCGCACCCACATGATAATATTGCTAAGACGCAAGTGTCTTAAAGGGTCCAAACTTAGTTTTAAGATTTAAGACCATGTTTGGATGGACTTTTGTTATATTTAAGAACAATTTAAGACTATATTTTATGCAAAAAAACCACACCACTTTTACACAAGTTAAAGAGTACGAATAAGTCCTTTGGGACCCTAAATATGTAAACTGACAGGTTTTGTCAATTACGGTCGGATTTGTATATAATTGTACTGATGCTCGTGAATGTTGTTCTTAGTCTTAATTACGAATAATATGTTGTTTTGTACATTGTAATTTATTTGCTGGTATAAATGTTGTACTGGATTTACAGAGACACCAAAGAATAATAATATTAATTTTGGTGAATATGTAATAGACCTACTGATGGTTTTGTTCTGTAAAAGAAAAATAATTATTATTTACTTGAATAGGCAGTGTATTGTGAAACGTTCCTCTTCTCGCATGccctttgtagtgactgtgtttTTCTATTTGGGGTGCATGGTGCCATTATTTACGATGGATAAAAAGTGATGATGAAACAGC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0001841 neural tube formation biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09226 ZIC5; zinc finger protein ZIC 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2021849 lncRNA downstream 20765 2463137 ~ 2463356 (-) True G1765021
TU2021848 lncRNA downstream 21112 2462785 ~ 2463009 (-) True G1765020
TU2021834 lncRNA downstream 35853 2448017 ~ 2448268 (-) True G1765006
TU2021830 lncRNA downstream 41163 2442670 ~ 2442958 (-) True G1765002
TU2021829 lncRNA downstream 46745 2436794 ~ 2437376 (-) True G1765001
TU2021797 lncRNA upstream 6351 2495411 ~ 2499543 (-) True G1764970
TU2021892 lncRNA upstream 22971 2512031 ~ 2512231 (-) True G1765064
TU2021908 lncRNA upstream 31858 2520918 ~ 2521118 (-) True G1765080
TU2021911 lncRNA upstream 33751 2522811 ~ 2523156 (-) True G1765083
TU2021918 lncRNA upstream 39279 2528339 ~ 2528557 (-) True G1765090
XR_002470194.2 mRNA downstream 17189 2442459 ~ 2466932 (-) True LOC110501251
XM_021578628.2 mRNA downstream 441351 2016068 ~ 2042770 (-) False gpr183a
XM_021578629.2 mRNA downstream 441354 2016068 ~ 2042767 (-) False gpr183a
XR_002470192.2 mRNA downstream 454893 2025352 ~ 2029228 (-) True gpr183a
XR_002470193.2 mRNA downstream 454894 2025352 ~ 2029227 (-) False gpr183a
XM_036958507.1 mRNA upstream 410766 2899826 ~ 2950367 (-) False tmtc4
XM_036958506.1 mRNA upstream 410766 2899826 ~ 2950391 (-) False tmtc4
XM_036958505.1 mRNA upstream 410766 2899826 ~ 2950860 (-) True tmtc4
XM_036958510.1 mRNA upstream 527790 3016850 ~ 3312036 (-) False nalcn
XM_036958514.1 mRNA upstream 527790 3016850 ~ 3312036 (-) False nalcn
TU2020381 other downstream 1056401 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 1264404 1218802 ~ 1219717 (-) True G1763459
TU2018826 other downstream 2378764 91269 ~ 105357 (-) True G1762219
TU2023027 other upstream 836661 3325721 ~ 3326343 (-) True G1766126
TU2023360 other upstream 958371 3447431 ~ 3451338 (-) False fgf14
TU2023362 other upstream 958371 3447431 ~ 3774009 (-) True fgf14
TU2026425 other upstream 3311701 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 3471090 5960150 ~ 5960815 (-) True G1769618

Expression Profile