RNA id: XM_036958510.1


Basic Information

Item Value
RNA id XM_036958510.1
length 6228
RNA type mRNA
GC content 0.51
exon number 47
gene id nalcn
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 3016850 ~ 3312040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGTGATTGCAGCTCCGTGCGCGCGCCCGCACGCTCCATCGTCACAACACACACCGGAAAACAGCTGATGTCATTGAGAGAACGACACACTGCCACCGATAACCGGGAATATACACACTTATCGCGTAGCACCACACTCCCCCTGTCTATCTCTGGCtggtctctctgcccccctctgacCTGGGGATGAATGCACCAATGAGGAGCCAGCTCACAGGTATGCCTGATCGCATGTTATGTGCAGTGCTGGAGCAATTTCAGCTTTACTTTTCCCTTTGatcCACTCTCTGTATAGTACAGCCAGCCCCAGCATGCTGAAGAGGAAGCAGAGCTCGAGGGTTGAGGCCCAGCCCATGACTGACTTTGGGCCCGACGAAACCCTCGCCGACAGCGCCGACATCTTCTGGATCAACAAACCAtgGGTGCACTCTCTGCTGCGAGCCTGTGCCATCATCAGCGTCATCAGCGTGTGTATGAACACACCCAAGACGTTCGAGCACTACCCCCCGCTGCAATACGTGACCTTTACCCTGGACACGCTGCTCATGTTCCTCTACACCGCTGAGATGATCGCCAAGATGCACATCAGAGGAATCATCAAGgGTGATAACTCGTACGTCAAGGATCGCTGGTGTATGTTTGACGGCTTCATGGTCTTCTTCCTCTGGGTGTCTCTGGTGCTTCAGGTGTTTGAGATAGCAGATGTTGTTGACCAGATGTCTCCCTGGGGCATGTTGAGAATCCCCAGAGCCCTCATCATGATCCGAGCCTTCAGGATCTACTTCCGCTTCGAGCTGCCACGCTCACGCATCACCAACATCCTCAAGCGATCGGGGGAACAGATCTGGAGTGTGTCGATATTCTTGCTCTTCTTCCTCCTTCTGTATGGAATTCTGGGAGTTCAGATGTTCGGAACGTTTAATCATCACTGTGTTACCAACGACACAACGAATGGTACTGTGACATGGAACAGCCTGGCCATCCCCGACACCCACTGTTCGCCAGACGGGGAGGGATACCTGTGTCCTTTGGGCTTTAAGTGTGTGGACTTGGAAGAACTGGGGCTCAGCAGACAGGAGCTGGGCTACAGCGGCTTCAACGAGCtcggtaCCAGTATCTTCACCGTGTACGAGGCAGCCTCTCAGGAGGGCTGGGTGTTCCTTATGTACAGAGCCATCGACAGTTTCCCTCGCTGGCGCTCCTACTTCTACTTCATCACGCTCATCTTCTTCCTCGCCTGGCTTGTCAAGaatgTTTTCATTGCGGTCATCATTGAAACGTTTGCTGAGATCAGAGTTCAGTTCCAGCAGATGTGGGGGTCCCGAAGCAGCACCACCTCTACTGCTACCACACAgATGTTCCACGAGGACTCGGCTGGAGGATGGCAGCTTGTTGCTGTGGACGTCAACAAACCACATGGCCGCGCACCAGCCTGCCTCCAGCAACTGATGCGCTCCTCCATCTTCCACATGTTCATTCTGACTATGGTTGCCGTAGACGTAATCGTTGCCGCTAGCAACTACTACAAGGGCGAGAACCACCAAAGGCACTATGACGAGTTCTACCTGGCTGAGGTTGCATTTACAGTGCTGTTTGACCTGGAGGCTATGCTTAAGGTCTGGTGCCTGGGCTTCACGGGCTACATCATCTCCTCTCTGCACAAGTTTGAGTTGCTGCTGGTGGTGGGGACCACCCTGCACATCTACCCTGACCTCTACCACTCCCAGTTCACCTACTTCCAGGTACTGCGAGTGGTGCGTCTGATAAAGATCTCCCCGGCACTAGAGGACTTTGTGTACAAGATATTTGGTCCCGGTAAGAAGCTGGGCAGCTTGGTGGTGTTCACAGCGAGCCTGCTCATAGTCATGTCAGCCATCAGTCTACAGATGTTCTGCTTCGTGGAGGAACTGGACCGATTTACCACCTTTCCCAGAGCATTCATGTCTATGTTCCAGATCTTAACCCAGGAGGGTTGGGTGGATGTGATGGACCAAACTCTTGTGGCTGTTGGTCAAATGTGGGCTCCTGTAGTGGCTATCTACTTCATCCTCTACCATCTGTTTGCTACTCTGATTCTGCTCAGTCTTTTCGTGGCTGTCATCCTTGATAATCTAGAGTTGGATGAAGACTTGAAGAAACTCAAACAActgAAGCAAAGTGAGGCGAACGCAGATACCAAAGAGAAGCTGCCCCTACGTCTAAGGATCTTTGAGAAGTTTCCTAATCGGCCCCAGATGGTCAAGATCTCCAAGCTGCCTTCTGATTTCACTGTTCCCAGAATCAGggagagTTTCATGAAGCAGTTCATCGATCGGCAGCAGCAGGACACCAGCTGTCTGTTCCGCCGCCTTCCTTccgcctcctcctcttcctgtgacCATTCCAAGCGATCCGCCATAGAAGACAACAAATACATCGACCAGAAGCTCCGCAGGTCAATATTCAGCATCAGAGCTCGCAACCTCCTGGAGAAGGAAACTACTATCAACAAAATCCTCCGgGCTTGTACCAGACAGCGTATGCTGAGTGGATCCTTTGAGGGCCAACCACTGAAAGAGCGCTCCATCCTCAGTGTCCAACACCATATACGCCAAGAacgcagGTCTCTGAGACATGGCTCCACTAGTCAGAGGATCAGCAGAGGAAAGTCCCTGGAGACACTCACACAAGATCGAGAGTCAGAGCAGAGATCGCACTGGCACCAGCATTCCAGTACAGTGCGTTATCGTAACGCCCAGCGAGAAGATAGTGAGAtcaagatgatccaggagaagaAGGAGCAGGCCGAGATGAAGCgcaaGGTCCAGGAAGAGGAACTGAGGGAGAACCATCCTTACTTTGACAAACCTCTCTTCATTGTGGGGAGAGAGCACCGCTTCAGAAACTTCTGTAGGACTGTAGTGCGGGCACGCTTCAATGCATCCAAAACAGATCCGATAACAGGAGCGGTGAACTCCAAATACCACCAGCTTTATGATCTCCTGGGGCTGGTCACCTATCTGGACTGGGTGATGATCGTAGTGACCATCTGCTCCTGTATCTCCATGATGTTTGAGTCTCCTTTCACCAGGGTCATGCATGTACCCACTCTACAGATAGGAGAGTATGTCTTTGTCATCTTCATGAGTATCGAGCTGAACCTGAAGATCATGGCGGACGGCCTGTTCTTTACTCCCACAGCCGTCATCAGAGACTTTGGAGGAGTCATGGACATCTTCATCTACCTCtGTAGTCTGATCTTCCTGTGTTGGCTGCCTCCTAACGTGCCTCCGGAGTCTGGGGCTCAGCTGCTGATGATGCTGAGGTGTCTTCGCCCCCTTCGCATCTTTAAACTGGTGCCCCAGATGAGGAAGGTGGTGCGGGAGGTCATCAAGGGTTTCAAGGAGATTTTCCTGgtctCCATCCTGCTCCTGACACTAATGCTGGTGTTTGCAAGCTTCGGCGTCCAGCTCTTTGCTGGAAAACTAGCCAAGTGCAATGACCCCCACGTATTCCTTCGGGAGGACTGCCATGGAATCTTCCGGATCAACGTGAGTGTGTCTAAAAACCTCAATCTCAAACTAAGACCAGGAGAGAAGAAGCCTGGCTTCTGGGTGCCAAGAGTGTGGGCCAACCCTCGCAACTTTAATTTTGACAATGTGGGTAATGCCATGCTGGCTTTGTTTGAGGTCCTGTCACTCAAAGGCTGGGTGGAGGTCCGTGATGTCATCATTCACCGCGTCGGACCGATACATGGTATCTACATCCATGTGTTTGTCTTTCTGGGCTGTATGATTGGACTCACTCTGTTTGTCGGAGTGGTCATCGCTAACTTCAATGAGAACAAGGGTACTGCTCTGCTGACAGTGGACCAGAGGAGGTGGGAGGACCTGAAGAGTCGACTGAAGATAGCCCagcctctccacctccccccacgaccagAGAATGCAGGGTTCCGTGCCAAGATGTATGACATCACTCAGCACCCCTTCTTCAAACGGGGTATCGCTGTGCTGGTTTTGGCCCAGTCAGTGCTGCTGTCTGTCAAGtgggaTGTAGATGACCCAGTAACAATGCCACTTGCTACCATGTCAGTGGTCTTCACCATTATCTTTGTGTTAGAGGTGACGATGAAGTTCATAGCTATGTCCCCGGCGGGGTACTGGCAGAGCAGACGGAACCGCTACGATTTACTGGTGACAATACTGGGAGTCATCTGGATAGTCTTGCACTTTGCTCTACTGAATGCATATACTTACATGATGGGCACGTGTGTGATCGTCTTCAGGTTCTTCACCATCTGTGGGAAGCATGTGACTCTGAAGATGCTACTGCTGACAGTCGTGGTCAGTATGTATAAAAGCTTCTTCATCATCGTGGGAatgttccttctcctcctctgctaCGCCTTCGCTGGAGTCGTCCTATTCGGAACCGTTAAATACGGAGAGAACATCAACAGGCATGCTAACTTCTCCACGGCAGGGAAGGCCATCACGGTTCTGTTCCGTATTGTCACGGGGGAAGACTGGAATAAGATCATGCATGACTGCATGGTGCAGCCTCCGTTCTGTACCCCCGATAAGCATCGCTACTGGGAGACGGACTGTGGGAACTACGCAGGGGCACTCATCTACTTTTGCTCCTTCTATGTCATCATTGCTTACATCATGCTTAACCTCCTcgtggcCATCATTGTGGAGAacttctctctcttctactccACTGAGGAGGACCAGCTACTGAGCTACAACGACCTCCGACACTTTCAGATTATCTGGAACAATGTGGATGacaagagagagGGAGTGATCCCAACATCGCGGGTGAAGTTCCTGCTGCGTCTGCTGAGGGGCAGGCTAGAGGTAGACCTGGATAAGGACAAGCTGCTGTTCAAACACATGTGCTATGAGATGGAGAGGCTGCACAACGGAGGGGACGTCACCTTCCACGACGTGCTCAGTATGTTGTCATACCGTTCAGTGGATATCAGGAAGTCTCTACAGCTGGAGGAGCTGCTGGCTAGAGAGCAGCTGGAGTACACCATAGAAGAAGAGGTGGCCAAGCAGACCATACGCATGTGGCTCAAGAAGTGCCTCAAACGCATCCGTGCTaAGCAGCAGCAGTCGTGCAGCATCATCCACAGCCTgagagagagccagcagcaggaGCTCAGTCGCTTCCTCAACCCCCCCAGCATACAGACCACCCTGCCTAGTGAGGACATCAACGCTAACCAGGACCATTCAACACAGCCAGAGTTGAGTGGTCTCCAACAGCTGCTGAGTCCTACCCTGTCAGACCGTGGGGGATACAGACAGGACTCCTCAGAACGCCCTCAGAGGAAACTGGGACAGTGGAGACTACCTGCAGgtcGTACCAGTGTCAAGTCCATGGTGTGTAAGATGAACCCTGTGAGTGACGAAGCCTCCTCGGGGTCAGAGGTCAAGAAATGGTGGACGCGTCAGCTGACCGTTGAGAGTGACGAGAGTGGTGATGACCTCATAGATATTTAAACGGGAAACTCAGAAAATTCAACCACGCTCACATATCGAACGAGAACTAGGATAGACAACTATAGCTCTGAGCGCTCAGTGTCAACACAGTACTCTGGTGGTTGAAACGTTCTTTCAAGGTTTTTTCAAGCATATCATACTTGACTGATTGGGGAAGTGACAGCGTGGACATCCTCCTCGCAAGTCTCTCCATCAGCAGCCATCTTACATCTTGTGGGACGTTATGATCAGTTTTTTCTCAAAATGGTGGCTTGTGGACACAGGAAAATGTCTCTTGGTTTGCAGTTAAGGCCATTTCAAGAACGTTGATTGTTAGAAACAACGCTTTAGCTGTTTGGTTTAAAGACTGTATATGAATGTACAAAGCCAAACCCATGACACCATTaattcctatgtgaagactcaatagccCATTTGAAGCCAAAAAAGTCAGTTAAGATGGCGTCTATAGAATACATAACATACACAGTTTGAGCTACCCCAGGAAGTGAcattgcaggctagctcagtgcttccCCATCTCATTGAGTGTCAAAGGTTAAAGTCCGACCGGGATACTGCAGGCTGCAATTTGCAACTAAAACGAGGCAACAATAAACAAGTCGTCCCCCTTGGGCCAATCCGTGTAATTTTGTAAGTGATGGATCTGTATGGCAAGActcatcattcacccaagtttcatCAAAATTGGGCAAGTGGTATCTGAGATTTTGTGTGTGACTTATGCACgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2022804 lncRNA downstream 2071 3012591 ~ 3014779 (-) True G1765911
TU2022802 lncRNA downstream 4775 3010959 ~ 3012075 (-) True G1765910
TU2022754 lncRNA downstream 69997 2944931 ~ 2946853 (-) True G1765869
TU2022720 lncRNA downstream 141733 2874740 ~ 2875117 (-) True G1765841
TU2022713 lncRNA downstream 158108 2858491 ~ 2858742 (-) True G1765834
TU2023015 lncRNA upstream 6149 3318185 ~ 3318399 (-) True G1766114
TU2023369 lncRNA upstream 19537 3331573 ~ 3353785 (-) True G1766446
TU2023685 lncRNA upstream 463631 3775667 ~ 3776056 (-) True G1766756
TU2023691 lncRNA upstream 468180 3780216 ~ 3780636 (-) True G1766762
TU2023693 lncRNA upstream 470358 3782394 ~ 3782603 (-) True G1766764
XM_036958505.1 mRNA downstream 65990 2899826 ~ 2950860 (-) True tmtc4
XM_036958506.1 mRNA downstream 66459 2899826 ~ 2950391 (-) False tmtc4
XM_036958507.1 mRNA downstream 66483 2899826 ~ 2950367 (-) False tmtc4
XM_021578633.2 mRNA downstream 527790 2484121 ~ 2489060 (-) True zic5
XR_002470194.2 mRNA downstream 549918 2442459 ~ 2466932 (-) True LOC110501251
XM_021578638.2 mRNA upstream 139339 3451375 ~ 3557228 (-) False fgf14
XM_021578637.2 mRNA upstream 139339 3451375 ~ 3774567 (-) False fgf14
XM_021578646.2 mRNA upstream 969942 4281978 ~ 4294159 (-) False shox
XM_021578647.2 mRNA upstream 969942 4281978 ~ 4294159 (-) False shox
XM_021578648.2 mRNA upstream 969942 4281978 ~ 4294159 (-) True shox
TU2020381 other downstream 1589130 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 1797133 1218802 ~ 1219717 (-) True G1763459
TU2018826 other downstream 2911493 91269 ~ 105357 (-) True G1762219
TU2023027 other upstream 13685 3325721 ~ 3326343 (-) True G1766126
TU2023360 other upstream 135395 3447431 ~ 3451338 (-) False fgf14
TU2023362 other upstream 135395 3447431 ~ 3774009 (-) True fgf14
TU2026425 other upstream 2488725 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 2648114 5960150 ~ 5960815 (-) True G1769618

Expression Profile