RNA id: XM_021578649.2


Basic Information

Item Value
RNA id XM_021578649.2
length 4969
RNA type mRNA
GC content 0.49
exon number 32
gene id si:ch211-269e2.1
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 4562223 ~ 4609211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTATGTCCCTCCTCCTGCTTTCTGTTGATATAATTCCGCTGGATGGCGCTGTCACATCAGGGACCTGGCGCTGCTTATTGACAGCTGCTATTTGGAATTCTCATGCTTCTGCAACTCTGAAACATCACTGGACACATCTATACTCATAGCTCCACACTGAAACGCACACCGGCTCCTGTGGGATGATGTGAAGAGATGATAGCAGAACCTACAGTCACCTCCAGGTCCTCAATACAGAATGAGAACTTGGCTGTGGACGCAAACTCCTCTGGAGCTGTCAATAACACAGTGGACGGAGCCCGGAATGAGAACAGACAGAAGAGTTTGagagggaagaggagggcaCGGGGGGGCTCTGAGAATGCCAAGCGCAGACACACCAAGGTAACCAATGGCAGTCTGGGTCGGGCACAGAACAGACACCTCAAACATGGGGACATTGAGGCCGTCACATTGTTCGAGGTGGTCACCATGGGCAGGAGTGCCATGCAGGCTGTAGTTGATGATTGGATTGAGGCGTACATCACAGACAGAGACTCTGGCCTCCTGGACCTCATTAGCTTCTTCATCCAGTGTTCTGGTTGCAAAGGTTTGGTGACAGCTGAGATGTTCCAAAGCAGGCAGGATGATGTCATGAGGAAGATGGTGGAGGAATTGGATGAGGGTTCGGGGCTGCAGTATAAGAAATTCCTGGCCTTCCCCTGGATCCTCACAGTCACGTGGCCCATGGACATGGACAGTGGGGAATATCCTCTCACCATGTCTGGTCCGTACTGGCGCCGGTTCCGTGGTgagttctgtgagtttgtgtcgGTGTTGGTAACCCAGTGTCAATACAATGTGATCTTTGACAGCTACCTCATGGACACACTCATCTCTCTGCTCACCGAGCTGTCCGACTCCCGTGTACGAGCCTTCAGACACACCTGCACATTGGCAGCAATGAAGTTGCTAAGCTCTCTGATTGGAGTAGCCCTTAGTCTGAGTGTGAGTATAGAGAACAGCCAGAGACTGGGCGAGGTGGAGAGAACCAAGACATCAGGAAGACGCAACTCACCAAGACTGGAGAGAATACACAGGAAGACCAcagagCTGCAGGATAGAAGGGTGGAGATAGAAAACATGATGGATGCCATATTCAAAGGAGTCTTCCTGAAGAGATACCGGGATGTGCTCCCAGAGATCCGGTCCATGTGTATGGAAGAGCTGGCTGTATGGATGAAACTTTACAGTCCAGTGTTTCTGACTGACAGCTACCTCAAATACATGGGCTGGATGATGCATGACAAGcTACCTGACGTGCGTCTGAAGTGTGTGTTGGGGCTACAGGGTCTGTATGGAGACCCGCTCCTCCTGCCCAAACTAGACCTCTTCAACAGCCGCTTcaagGACAGGATGATCTCTATGACTCTGGACAAGGACCACGAGGTGGCAGTTCAGACCCTGAGACTACTCATACTCATCTCCCAGTCAGCTGATGAGGTTATTAACCCTGAGGACTATAAGCAGCTGTTCCAGTTGGTGTACTCCTCACATCGTCCTCTGGCTACCACCGCAGGAGAGCTGCTCTACACACGgCTGCTCAGCTCCCCTACTCCGGCACCTGACCTCAGAGAGGGGGCGAGtgagcaggacacacacacacagctgacgaCAGCCAGAGTAAGGGCTCTGCTGCACTTCTACCAGGACAGTGCGCTCCATCAGCATGTAGTATACCTGGTAGACAGTCTGTGGGACTGCGCTGGTGCCATGCTGAAGGACTGGTCATCTCttacctcgttactgctacagGACCCCTCCACTCAGGATGCAGaTCTGAGTGCTGGAGAGCAGTCTCTGGTTGTAGAGCTATTGGTGGCATCAGTGCGTCAGGCAGTAGAGGGACCCCTGCTGGCGGGAAGGAGCACATGCAAGAAGTTGGTAAGTGCCAGAGAGAAAAAGTCTCAGGTAGATGACTGTGGCAGACTCACTGAACACTTCCTCAAGGTACTGCCACAGTTGCTGATTAAGTATTCAGGGAGCCCAGAAACTGTGGCATCTCTTTTGAAGATACCTCAGTACTTACACCCAGATTCGCCAAATGCAGAATTCCCACAGGCGTTGTCGGGCCTGCTGGCTGAGATGGGAGCTGTTTTGGAGCTCCACACTGACCCTGCAGTGCTGGAGGCGGCTGCTCGCTCATACCTCAGCCTGTGTGGAGAGGAAACAGCCTGGCACCCCCTGGCACGACCTGGCAGAGACGCAGTGGTCCAATGCTGGGCAGACAGATTGGCAGCACTGCTGGGTGACGCACTGCAGgATGGCAACTTCACTGCTGATGAGGAAAAGACAGGAGAGATTCTATCCACACTGAAGAAACTCACTGCTTTCCACAATGCCCAGGACCTGTCTCATTGGGGACTGTATGAGCAGgtctttcctcttctctcagtgGAGATCATTCACGGTGGATTACCTACACAGcTGACAGTGGAAGCTCTGCAGTGTGTATCTTACTCTGTCCTCTGGAACCTCAACACCAGTAGAGAAACCCTGACCTCACGGgaAAAGGCCGTAGCCCAGAGGAGTCAGATGAGAGCATTGTGTGAGAAGTGTCTACGTTGTCTGTCCCACAACGATCAGAGTGTGAAGGAGCAGgcattcctgtctctgtgtgatgTCTTGACGGCCCACAACTACCAGTTGCAAGTGTGGGATCCCTCGTCTTACGGCCCCCTGCTCTACACTCCCGACCCGAAACTTCAGAGGGCGCTGCTTGCCTTCATTCTGGAGCACGTCTTCACTGGAGCAGAGTACGACAGCCATAGCAGGGGTAGTGATGTAGAGTCTGGCGAGGGGAGGTTGGAGGAGCTCCACAGACGTAGGAGCTTATTGGCAGGCTTCTGTAAACTCATAGTCCACGGGGTGCTGGAGATGAGTATGGCTGCTGATCTCTTTAAGCATTACATGAAGtattATAATAACTTTGGTGACATCATTAAGGAGACTCTGAGCAGAACGCGGCAGATGGATAAGATAGAGAGTGCTCGCACGCTGGTGCTCTGTCTGCAACAGTTGTTCCTGCGTCTGAAGCAGGAGCAGGACAGTGGAGTCACCTGTAGCTCAGGTGTCCAAACATTCAGCAGCATCAAGGAGCTGGCCAGACGCTTCTCTCTCACCTTTGGCTGGGACCAGACAAAGTCCAGAGAGTCCCTCACTCTGATCCATAGggaCGGTATAGAGTTTGTTTTTCAGGGCTTTGTCCAGAGAGCAGAGAAGCCCTCTCCTCCGTACCTCTCCTACCTCACCATCCTCAGCGAGTTCTCCAGCAAGCTCCTCAGACCAGACAAAAAgattgtttaCACCTACCTACAGAGGTACATAAGTGAACAGATCATCAGTAACAGAGAGGAGTGTTGGCTGCCACTCATCTACTACCGAGCCTCCTTATTGGCTACTGGGGCTGAGGGGGAAGATGCTGTGTCCTTCATCAGCTCTGATACGCTAAAGCAACCGTCTCTAGCCAATCGCTCACGCTCTCCCTCTGTCAGACACAGCCCGACTGCTGATGGAGACATGAGGTCCCCGTCTGCTCTTACCTCTACTGAGACCAAAGTAAGGAGGCTCCATAAGGCCAGCAGCAGTACAAGCCcagaggacaggaagccagaggTTGAGCTTGGTCCCATCGCCAGGGAACCCCCGCCGACCATAGTGATATCAGAGGAGCCGTTCCACGCTAACGAGGAATTGGATGTGGACACTGTGGAGGTTGACCTGTGAACTGGAAGATGGATCGAATAAAATGAAAAaagtcacatgctttgtaaacaaaagGTGtatactaacagtgaaatgcttagttacgggaccttcccaacaatgcggagagagagaaaatagtgaaataataataaatacaccaatgagtaacgataacttggggtaccagtaccgagtcgatgtgtagGTGTACGAGGTAACGATTTAAATATAACTAGGCAACACgataacagtagcagcagcgtatgtgatgagtcgaTATAGAAATGGATGGGAGCAATATGACAAACATTATCACCTTTCCTATCAGAAAGGATGTGGTGGTAGTACCATATTGCTTATAACTCCCAATACCTATTGATATCTACACAGGTGGCTGGGGGTCGTGTCTGGTCAAGGATGGAATAAACACCCTTATACGCATCTTAGTTATCAAAAAGGGACAACGGTCTTGCTTCCTCTCCTTCATGGCTCTGATTTGAAAGAGGAAGAAAATAATATGGTGTATCCTTTCCCCCATCCAGATGTAGGAAAGGAGATGAGACATGGAGTATTTTTCTGTAATCTTATTTAAACCAACTGTCAAAATAGAACTGGCTCTTtgacaaaagttttttttttttttttttacagcttccAGCCCATGTAGACAATTTGACAGTCTTCCTTAGAGAAGATGCTGTACCAATGGTAGGTTAAGACTAATTACCCAGTACCTCCATTGTCCTGGAATCAATTATGTGGTGCATTATGGATATAAGCTCTTTTTATTTGTATTGAAACCAATGTATCTGCTGGTGCTGTTATATTTCACTTCGCTCTTGGGAAAAGTCCCTCTAGATACGAAAGAATGACTCAATTGTTTATATCAACAGCTTTTAGGGAACGCTAGTGGGCTCGTTTTTACACTAAAAGCATATTCATGAAAATGCCAACTTAATAGCAAATGCTATTTTGATGATAAAATAAGCATATTGTGTGTATAAGAGGTTAGGGTCAGATGTGCCCTAGCTAGGTGATTGTGTTATGGATTAGATCTCACCTACGTTATTGAAACACACCACTGTTTATTTGTTGTTCTAATGGTAGATTTTTACACAACAGTGTGCTCTGGAAAGGTGTGTGTGGTCATAGTAGCTGATCAGACCTGTTTTAATTGACTTGTCATTGGAAATAGTACCATCAATAAATATCACTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2025012 lncRNA downstream 88139 4472290 ~ 4474084 (-) True G1767972
TU2024590 lncRNA downstream 118949 4443034 ~ 4443274 (-) True G1767621
TU2024558 lncRNA downstream 148389 4413432 ~ 4413834 (-) True G1767589
TU2024410 lncRNA downstream 248610 4313365 ~ 4313613 (-) True G1767442
TU2024408 lncRNA downstream 251022 4310744 ~ 4311201 (-) True G1767440
TU2025162 lncRNA upstream 149656 4758867 ~ 4824894 (-) True G1768106
TU2025265 lncRNA upstream 299103 4908314 ~ 4935666 (-) True G1768198
TU2025297 lncRNA upstream 340178 4949389 ~ 4950484 (-) True G1768230
TU2025304 lncRNA upstream 347764 4956975 ~ 4957225 (-) True G1768237
TU2025479 lncRNA upstream 419538 5028749 ~ 5031511 (-) True G1768402
XM_021578646.2 mRNA downstream 268064 4281978 ~ 4294159 (-) False shox
XM_021578647.2 mRNA downstream 268064 4281978 ~ 4294159 (-) False shox
XM_021578648.2 mRNA downstream 268064 4281978 ~ 4294159 (-) True shox
XM_021578637.2 mRNA downstream 787656 3451375 ~ 3774567 (-) False fgf14
XM_021578638.2 mRNA downstream 1004995 3451375 ~ 3557228 (-) False fgf14
XM_021578658.2 mRNA upstream 1685 4610896 ~ 4614658 (-) False LOC110501266
XM_021578657.2 mRNA upstream 1686 4610897 ~ 4614567 (-) True LOC110501266
XM_021578659.2 mRNA upstream 44270 4653481 ~ 4659691 (-) True LOC110501268
XM_021578692.2 mRNA upstream 66304 4675515 ~ 4756128 (-) False LOC110501269
XM_036958544.1 mRNA upstream 70845 4680056 ~ 4756240 (-) False LOC110501269
TU2023362 other downstream 788214 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 1110885 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 1235880 3325721 ~ 3326343 (-) True G1766126
TU2020381 other downstream 3134503 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 3342506 1218802 ~ 1219717 (-) True G1763459
TU2026425 other upstream 1191550 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 1350939 5960150 ~ 5960815 (-) True G1769618
TU2028322 other upstream 2642573 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 2853002 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 4015811 8625022 ~ 8641138 (-) True LOC110501323

Expression Profile