RNA id: TCONS_00051244


Basic Information

Item Value
RNA id TCONS_00051244
length 2208
RNA type mRNA
GC content 0.47
exon number 20
gene id XLOC_026279
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20041907 ~ 20063782 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATGGAGAAATGGACTCCTCTGCTAAAGCCACTGTTTGGGTGCAGGATGATGTGTTGAAGTTGTTGGATGCCATGAAAGTGAATCTGCCAGAAAAAGATCTGGCCAAATACAAGACATCCGAGTCCCATTTGGATTGGGAGAAAGTGGCTTTTGATGCTTACTCTGCAGAAGTGTGCAAACAGAAATGGCAAGAAGTTTCCCGTGAGATACGCAAGTTCCGCACCCTCACCGAGCTGATCGTGGACGCACAGGACTACATTAAAAATCCATACAAGGGAAAGAAGCTGAAGAAACACCCAGACTTCCCCAAAAAGCCATTGACACCATATTTTCGTTTCTTCATGGAGAAGCGTGCCAAGTATGCTAAGCTACATCCAGAGATGAGCAACCTGGATCTCACAAAAATCCTGTCCAAAAAATACAAGGAGCTCCCAGACCGTAAAAAAGAGAAATACGTGAAAGATTTTCTCAGAGAAAAGGAGACTTTTATGCTGAGCATGATGAAGTTCAAGCAGGAACATCCTGACCTTTTGGAGAACGTTAACAAGAAGTCCAACGTTCCAGAGAAGGCCAAGACACCCCAACAACTGTGGTACAGCCATGAGAAGAAGGCTTTTCTTAAAGCACACCCTGATGCGACCACCAAAGACATCAAGGATAATCTTGGCAAGCAGTGGCCACAGCTTTCAGATAAGAAGAGGATCAAATGGATCGCAAAGTCTCTGGAGCAACATAAACTATATGAGGAAAAGATGCGTGAGTTTATCCAGCAGCATCCAGAGATGAACATGACACAGGGAGACATCGTCAAATCCAGTCTGACCAAAGCAGAACGTCAGCTCAAGGACAAGTTTGATGGGAGGCCAGACAAACCACCTTCaaacggTTATTCTTTGTTCTGTGCTGAGCTGATGTCCAGTATGAAGGACGTTCCCAGTACGGAGCGTATGGTCATGTGCAGCCAGCGCTGGAAACTCCTCAAACAGGCCGAGAAAGACGCATACCAAAAGCGATGTGAACAGaaaaagaaagaatatGAAGTTGAGATGAACCGCTACTTGTTAAGTATCTCAGAGGAGGAACAGCAGAGAATACTGTCAGAACAGAAGATGGGCAGCTTCAAAAAGGCCGGCGGAATCAGCAGCCCGGCTTCAAAAAAGAAAAGCTCTAAAGCAAAGCCTAGCGCAGAAAAGCCCAAGCCGCCCATTTCTGCAATGTTCATATTCTCTGAGGAGAAGCGTCCAAAACTTAAGCAGGAAAAACCTGAGCTTTCTGACATGGAGCTCACCAGACTGCTGGCCCGCATGTGGAATGAGCTTACTGACAAGAAGAAGGAGAAATATAAAACCCTGGAGATGGCCCTGAAGGCAGAGGCTGAAAAACAGAGCAGAGAGGAGAAAGGGAAGCTACCAGAAACGCCCAAAACAGCTCAGGAAATCTGGCAACAGAGCGTCATCGGAGACTATCTGGCCCGGTTTAAGAATGATCGGGCGAAAGCTCAGAAAACCATGGAGGCCACCTGGAACACCATGGAGAAGAAGGAGAAGATCGTGTGGATCAAGAAAGCTGCTGAGGACCAGAAGAGATATGAAAGAGAGCTGAGTGAAATGCGATCCCCTGCCCCAGTGATAACCCCTGGGAAAAAGATGAAATTTGACGGCGAACCTAAGAAACCACCCTCGAATGGTTATCAAAAGTTCTCTCAGGAGATGCTGTCGAATGGCGAACTCAACCATCTGCCCATGAAAGAGCGCATGGGTGAAATCGGAGGCCGCTGGCAGAGACTCCCTCAGAAAGACAAGGACCGCTACAAACGCATTGCAGAGGAGAAACAGAGGCTTTACAAAGTGGAGCTTGAGCAGTGGCTCACGAGTATATCATCACAAGAGCGAGCTGCGTATAAAGAATACAATTCTCTGAAACGGAGGAGTACAGCAAAACCAGGTGGCACCAATGCTAAAGTCAAACCTAAGGCTAAAAGATCGGACGATGAAGAGGATGAAGATGAGGACGATGACGATGAGGATGATGATAAGGACTCTGACGGATCATCCTCTGATGACagtgatgatgacgatgatgacgaCGATGAAGATAATGAAGAAGACGTAGAGGACGAAGAGGTGGACGACAAGGAGAACAAatctgaaagcagcagcagttctTCCAGCTCTGACGATTCATCCGCTTCAGACTCGGACTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030616-252 Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to several human genes including UBTF (upstream binding transcription factor).

Ensembl:

ensembl_id ENSDART00000165695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051241 lncRNA downstream 51466 19986341 ~ 19992463 (-) False XLOC_026277
TCONS_00051240 lncRNA downstream 51466 19986341 ~ 19992463 (-) True XLOC_026277
TCONS_00052995 lncRNA downstream 70309 19971681 ~ 19973620 (-) True XLOC_026276
TCONS_00052456 lncRNA downstream 223122 19813258 ~ 19820807 (-) True XLOC_026274
TCONS_00052994 lncRNA downstream 227330 19813258 ~ 19816599 (-) False XLOC_026274
TCONS_00052996 lncRNA upstream 71857 20130274 ~ 20401620 (-) False XLOC_026283
TCONS_00052997 lncRNA upstream 71857 20130274 ~ 20401724 (-) True XLOC_026283
TCONS_00052998 lncRNA upstream 842649 20901066 ~ 20915710 (-) True XLOC_026285
TCONS_00051269 lncRNA upstream 998314 21056731 ~ 21062759 (-) True XLOC_026290
TCONS_00051278 lncRNA upstream 1143011 21201428 ~ 21206946 (-) True XLOC_026295
TCONS_00051242 mRNA downstream 3293 20025709 ~ 20040636 (-) True XLOC_026278
TCONS_00051239 mRNA downstream 144015 19850937 ~ 19899914 (-) True XLOC_026275
TCONS_00051236 mRNA downstream 482871 19557604 ~ 19561058 (-) False XLOC_026273
TCONS_00051235 mRNA downstream 526467 19507415 ~ 19517462 (-) True XLOC_026272
TCONS_00051234 mRNA downstream 548115 19487707 ~ 19495814 (-) True XLOC_026271
TCONS_00051246 mRNA upstream 7444 20065861 ~ 20091964 (-) False XLOC_026280
TCONS_00051247 mRNA upstream 7444 20065861 ~ 20092124 (-) True XLOC_026280
TCONS_00051248 mRNA upstream 45329 20103746 ~ 20106233 (-) False XLOC_026281
TCONS_00051250 mRNA upstream 49804 20108221 ~ 20118342 (-) True XLOC_026282
TCONS_00051251 mRNA upstream 599786 20658203 ~ 20793655 (-) False XLOC_026284
TCONS_00051231 other downstream 710298 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051220 other downstream 1238708 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051202 other downstream 1751724 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051201 other downstream 1752568 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051199 other downstream 1887905 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051249 other upstream 45642 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051254 other upstream 662423 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051258 other upstream 913602 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051260 other upstream 936087 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051287 other upstream 1558503 21616920 ~ 21617040 (-) True XLOC_026301

Expression Profile

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