RNA id: TCONS_00051246


Basic Information

Item Value
RNA id TCONS_00051246
length 3463
RNA type mRNA
GC content 0.47
exon number 21
gene id XLOC_026280
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20065861 ~ 20092124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGAAGACGTGGAAACCCAGCACAGAGACCCGCCAGGACCACCTGGGCTCAGGTTATGAGCGAGACTTTCTGAAGTTTCAGGGACAGAGAGAAGACAGTCTCGATGATGGAAGCTGTTTCATTTGATGGGGACAATGACATGTCCTATGAGGACAGTGAGTCGCCTCTACCCTCTCCATTTACCTTGACGCCCGCGGCACACAAAGGCAGCTACGATCTAGAACAGGTCAGACAGCAAGGCGAGGAGCAGCCACAGACCTTCACCTTCAATAGAGACCTAGAGGCCGCTAGAAATACCAACACCAATGCCATAAAGAGAGGAGATGCAGAGTCATACGTGGAGCTAAACGAGCTGCGTGGTGAAATATGGCAGGAGACGGGCCGCTGGGTGGGTTTTGAGGAGAACTTCAGCCCTGCCACGGGACAGTGGAGCCAGTCCCATGTCTCCTACCTCACCTTCAAAAGCCTCATTCAGCTCCGCAAGGTCATGAGCACAGGGGCTGTGCTGCTGGATGTTGATGACAGCAGTTTATCCAGCATTGGCCAGAAGATGGTGGAACAACTTCTGCTCAAAAAAGAGATCCGGCCCTCTGACCGTGACGCTCTCGTCACCATACTGCAACGCAAGCGCAGCCAGTTAGAGCCTGTTGTATCCCCTGGTTCAGCAGACCTTGAGCTGCAGACGTTCTCTGTCACCAAACAGCGAGATCAGGTTGACCGTGTGGAGGGCTCTGTGGTTTTGTCAGGTGTGGTGGAGAACCTACAGAAACCAGTGGTGGCGTTTGCACGTCTGCGGGATTCGGTGGTGATGGAGGGGGTCCTGGAAGCTTCCATTCCAGTTCGTTTCGTCTTCTTCCTCGTGGGCCCCAGTCACAGCGGCATGGACTATCATGAGAGCGGCCGAGCCATGGCAGCACTGATGGCCGACTGGGTGTTCTCTCTGGAGGCTTACTTGGCCACTAATGAGAGGGATCTGTACAATGCCATGGCAGACTTCATGGACTGCAGCATCGTGATCCCACCTACAGACATCCAGGATGACAGCATGCTGAAGCCAATTATCAACTTCCAGAAGAAGATGCTACATGACAGAGTCCGCCCATATGACACTCGAATCATGGTTGGGGGCAAAGCCCCAACTGGACCTGCAAAGCCAAGAGAGGATCCACTGGCCCGTACCGGCCTTCCATTTGGTGGTATGGTCAAAGACATTAAACGCCGCTACAAGCATTACCTTAGTGACTTCACTGATGCATTGGACCCTCAAGTGCTGTCTGCTGTCATCTTCATCTACTTCGCTGCCCTTTCTCCTGCGATCACCTTTGGAGGACTTCTTGCGGATAAGACGGAGCACATGATGGGGGTCTCTGAGATGATGGTCTCCACCTGCGTGCAGGGTGTCATCTTTTGTCTCTTTGCGGCTCAACCAGTTCTCGTCATAGGGTTTACTGGACCATTAATGGTGTTTGAGGAGGCGTTCTTTCAGTTCTGCAAGGGGTATGGCTTTGAGTACATCGTTGGCCGTGTTTGGGTGGGTATGTGGCTGATCGTCATTGTGGTGATCATTATGGCAGTGGAGGGAAGCTTCCTGGTCCGTTTCATCTCGCGCTTCACCCAGGAGATCTTCTCCATTTTGATCTCTCTCATTTTCATCTACGAGACCTTTTCCAAGCTTATCAAGATTTTCAAAGCTCATCCTTTGATCTTGAACTACGAACACTTAAATGATTCCTTGGATGACCCATTCCATCCAATCAAAAAAGTTATCAACGTCACTCTTCATCCAGATGGCAATGTAACTGAACATCATGAAATAATAGAGAGGGCCTATCCTAACACTGCCCTGCTGTCCATGTGTCTTATGTTTGGCTGTTTCTTCATTGCCTTGTATCTCCGTGGGTTTAAAACAAGCACCTACCTTCCTGGTCCTATCCGTCGGATGGTTGGAGATTTTGGTGTCCCCATCGCCATCTTCTTCATGATTGCTGTGGATATCAGCATCAGTGATGCCTACACACAGAAACTGGTGGTGCCAAAGGGTCTGACCGTGTCCAACACTTCTGCCAGAGGCTGGTTTATCAGCCCGTTTGGTGAGAAGAAGACATTCCCTGTCTGGATGATGTTTGCCTGTGTTGTTCCTGCCATGTTGGTCTTCATCCTTATTTTCCTTGAGTCCCAGATCACCACGCTGATCGTGAGTAAACCTGAGCGGAAAATGGTGAAGGGCTCTGGTTTCCATGTGGACCTCCTCCTGCTGGTGTTCCTGGGAGGAGTTGGATCTCTGTTTGGTGTCCCGTGGCTCAGTGCTGCTACTGTGAGGTCTGTGACCCACGCCAATGCCCTAACCGTCATGACCAAAGGCCCCAGACCTCAGATTGAACGCGTGTTAGAGCAAAGAGTCAGTGGGATTTTGGTGGCGGTGATGGTTGGTGTCTCAATTCTCATGGAGCCCATTCTGAAGATGATTCCTATGACTGCTCTGTTCGGGATCTTCCTCTACATGGGTATCACTTCACTGAGTGGCATCCAGCTTTGGGACCGCATGCTCCTGCTCATTACGCCGAAAAAGCATCATCCGGCTGTTCCATATGTCACCCGTGTGCCAACTATGCGTATGCACTTGTACACTTTGATCCAAGTGATGTGTTTGGCGTTGCTGTGGGTGGTAAAATCGAGTAATTTCTCACTCGCCCTTCCATTCGTTCTGATCCTCACGATCCCTCTGAGAATGTTCATGACCGGTCACGTCTTCACTGTTATGGAAATGAAATGTCTGGATGCTGATGACGCAAACGTGAAATTTGATGATGAAGACGACTAAAAAAACAATCTCTAGATTCTTGATTTCTGATTCCAAACCACTATGAATTCATCTCACTGTGTGCATTACATGAGAATAATTTTGcttatatttttttaactgttgtACATTCAAATCCCTTAGTTTAACAGGTCAGAAATGTTGAAGAATGTGATCAATGCACACCTAAAGTTCATAAACTGTTCATATACATTCCGTAGTTGTTTATCCGAATAGTATGTTTTCTTACTTTTGCATAGAACATTGTGCTTAagcttttgattttattttatttttgtgtgtgtgtttgtgcctttTAAGATTTGGGATTAAAACATCatcctgttatttatttatttaaagtattcaGGGTTTAAAGCAGGAAACTTCACGTTGGAGTGAGGCATGTCAACTATGCACCAGCTCGATTGTACCCCCGTCCTGTTTCCACAGGTGATGCCAATGCAAAATATGTGCCTTTATATTTCTTATAAGAAGTTGAATGTTTCTGAATTTCGAACATCATACCTGTAAATATATTAGGCTTATGATTGTTAGCGTAGGATAGATTTTACACAGTATAAATGATTCATTTGCTTTATGTATGCTTGGTATGTTATGGTGTGTGACTTTGTTTATTGATtaaaattctttaaaacatc

Function

GO:

id name namespace
GO:0051453 regulation of intracellular pH biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0055085 transmembrane transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0006811 ion transport biological_process
GO:0050801 ion homeostasis biological_process
GO:0006820 anion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0005515 protein binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010525-1 Predicted to enable anion:anion antiporter activity and bicarbonate transmembrane transporter activity. Acts upstream of or within anion transport; embryonic hemopoiesis; and erythrocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in several structures, including erythroid lineage cell; hematopoietic system; liver; mesoderm; and pleuroperitoneal region. Used to study cardiomyopathy. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; hereditary spherocytosis; hereditary spherocytosis type 4; malaria; and renal tubular acidosis. Orthologous to human SLC4A1 (solute carrier family 4 member 1 (Diego blood group)).

Ensembl:

ensembl_id ENSDART00000029386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051241 lncRNA downstream 73398 19986341 ~ 19992463 (-) False XLOC_026277
TCONS_00051240 lncRNA downstream 73398 19986341 ~ 19992463 (-) True XLOC_026277
TCONS_00052995 lncRNA downstream 92241 19971681 ~ 19973620 (-) True XLOC_026276
TCONS_00052456 lncRNA downstream 245054 19813258 ~ 19820807 (-) True XLOC_026274
TCONS_00052994 lncRNA downstream 249262 19813258 ~ 19816599 (-) False XLOC_026274
TCONS_00052996 lncRNA upstream 38310 20130274 ~ 20401620 (-) False XLOC_026283
TCONS_00052997 lncRNA upstream 38310 20130274 ~ 20401724 (-) True XLOC_026283
TCONS_00052998 lncRNA upstream 809102 20901066 ~ 20915710 (-) True XLOC_026285
TCONS_00051269 lncRNA upstream 964767 21056731 ~ 21062759 (-) True XLOC_026290
TCONS_00051278 lncRNA upstream 1109464 21201428 ~ 21206946 (-) True XLOC_026295
TCONS_00051245 mRNA downstream 2079 20049662 ~ 20063782 (-) True XLOC_026279
TCONS_00051243 mRNA downstream 2190 20041907 ~ 20063671 (-) False XLOC_026279
TCONS_00051244 mRNA downstream 7444 20043929 ~ 20058417 (-) False XLOC_026279
TCONS_00051242 mRNA downstream 25225 20025709 ~ 20040636 (-) True XLOC_026278
TCONS_00051239 mRNA downstream 165947 19850937 ~ 19899914 (-) True XLOC_026275
TCONS_00051248 mRNA upstream 11782 20103746 ~ 20106233 (-) False XLOC_026281
TCONS_00051250 mRNA upstream 16257 20108221 ~ 20118342 (-) True XLOC_026282
TCONS_00051251 mRNA upstream 566239 20658203 ~ 20793655 (-) False XLOC_026284
TCONS_00051252 mRNA upstream 566255 20658219 ~ 20721064 (-) False XLOC_026284
TCONS_00051253 mRNA upstream 566255 20658219 ~ 20793655 (-) False XLOC_026284
TCONS_00051231 other downstream 732230 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051220 other downstream 1260640 18798431 ~ 18805221 (-) False XLOC_026264
TCONS_00051202 other downstream 1773656 18202949 ~ 18292205 (-) True XLOC_026252
TCONS_00051201 other downstream 1774500 18187330 ~ 18291361 (-) False XLOC_026252
TCONS_00051199 other downstream 1909837 18152487 ~ 18156024 (-) False XLOC_026252
TCONS_00051249 other upstream 12095 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051254 other upstream 628876 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051258 other upstream 880055 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051260 other upstream 902540 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051287 other upstream 1524956 21616920 ~ 21617040 (-) True XLOC_026301

Expression Profile

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