RNA id: XM_036959575.1


Basic Information

Item Value
RNA id XM_036959575.1
length 1798
RNA type mRNA
GC content 0.46
exon number 1
gene id lrrc3
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5224562 ~ 5226359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACCGTTCCCTCTTGAGTAACTCTCTTCTCTTTCCAATCAGAAATCAGCCTCTTGGATTCTACCTGGAATACTCTCAATGCAGCTCATGTGAAACTGGGCTCTACTGAAACCCTTTGGAAACAGCAGGACATGAAAATTATACTTCACCGATGGATCTGATGGATTAACTACAGATAAAACCTTGACAGCTTGTAAGGAAGTTAAAACTGTCTTGTCTCGTGGTTTTCAAGCCATAACGATAGAACAACGTGACACAAGGTTTAACCATGACTGCTCTTTCATGACAGGACCAACAGGAGCACACAGCTGAAGATGTCCAACCGTATGGGTCATGATCGGCCCAGAAATCTCTTGCTCTCAGCTGTCTCGGCTCTCTTGTGGGCCTTGCACTTTGGAATATTGTTCAGAAGTGCACTGGTGACCGCTTGTCCCAAGAGCTGCCACTGCATGGAGAAGAACAGCCTTGCCGTGCTGCAGTGCATGTCGCGCAACCTGGAGAACATCCCGGCTGACCTGCCGCATGACACTGTAGTCCTGCTGCTGGCCTCAAACAGGATTACCAAGATCCCCAAACAGGCCTTTAAGGACCTCAACAGATTGCAGGAACTGGATCTGTCCAACAACGCCATTGAGACGGTGGACGCTGGGGCCTTCCAGGGGGTCTCCGACGTCCTTCGGGTCCTGGACCTGTCCAACAACCGCATAAGCAGCGTGCCCAAAGAGGCATTTGCCAAACTTCAGGCCAAAATCAGCCTCTCCAACAATCCCTGGCACTGCGAGTGCAGCTTGCAGGAGGTCCTGAGGGAGCTGAGACTGGACCCAGAGACGGTCAACGAGGTGAGCTGTCACACGGCTGTGGAGGAGGAGTACGCCGGCAAACCCATTATCAAGGTCCTGGACTCGGGCATCAACTTCTGCAACTTCCACCACAAGACCACCGATGTGGCCATGTTCGTCACTGTGTTCGGCTGGTTCACCATGGTGATAGCCTACGTGATCTACTACGTGCGGCAGAACCAGGAGGATGCCAGGAGGCACATGGAGTACCTCAAGTCCCTGCCCAGCAGCTCGCAGATCAGCAAAGACTTTGACACGATCAGCACGGTTCTCTAGCAGGCCCGCTGTGGCACACATTTGagaaagtgtgtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtggatgaTAGGGGGAATGGTGTTCTTGATTTTTGAGCTGGGATTTATTTTAGGTGGCCTTAGGAGACAATAGATCTGGACTTCATCTGGACCTTTAGTATTTATAATTGCTCTCTGTATTTCTGTATGGACACAGATATACTattttaatttgaccagtttctcacagcaggaaaataatctttccgcaacaggaaatgtgaattattatgtggattataatgagcatttttgtaggggttgatacgttTTTCGTCGGGGGAAaccaagtctgacattttaaagtggaaattccaaactttagaagcctttttaaacctcaaatacactaaaaGTTGCATTTCCTGCGGCACATGAACATTTTGTTtgacaacagagtgatcaaattacgAAAAAGGACATAcaatgagggaaaaaagtatttgatcccctgcttaTTTTGTGGGTTTGCCCACTGataaagaaatgatcagtctataattttaatggtatgtttatttgaacagtgagagacagaataacaacaaaagaaTCCAGAAAAAACGCATGTGAAAAATGTtacaaattgatttgcattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2025610 lncRNA downstream 4166 5220187 ~ 5220396 (-) True G1768518
TU2025605 lncRNA downstream 7436 5215218 ~ 5217126 (-) True G1768513
TU2025592 lncRNA downstream 17637 5206683 ~ 5206925 (-) True G1768500
TU2025590 lncRNA downstream 18787 5205568 ~ 5205775 (-) True G1768498
TU2025490 lncRNA downstream 104843 5094648 ~ 5119719 (-) False G1768410
TU2025625 lncRNA upstream 6183 5232542 ~ 5232922 (-) True G1768533
TU2026262 lncRNA upstream 426870 5653229 ~ 5704091 (-) True G1769139
TU2026323 lncRNA upstream 523778 5750137 ~ 5774381 (-) True G1769193
TU2026344 lncRNA upstream 553005 5779364 ~ 5779568 (-) True G1769209
TU2026364 lncRNA upstream 573487 5799846 ~ 5800107 (-) True G1769229
XM_021578706.2 mRNA downstream 29222 5177787 ~ 5195340 (-) False LOC110501278
XR_005038767.1 mRNA downstream 29222 5177787 ~ 5195340 (-) True LOC110501278
NM_001197215.1 mRNA downstream 37946 5184849 ~ 5186616 (-) True trim63b
XM_021578695.2 mRNA downstream 306590 4794026 ~ 4917972 (-) False LOC110501274
XM_021578696.2 mRNA downstream 306590 4794026 ~ 4917972 (-) False LOC110501274
XM_036958552.1 mRNA upstream 18042 5244401 ~ 5410474 (-) False pcbp3
XM_036958551.1 mRNA upstream 18042 5244401 ~ 5417884 (-) False pcbp3
XM_036958550.1 mRNA upstream 18042 5244401 ~ 5417899 (-) False pcbp3
XM_036958553.1 mRNA upstream 18042 5244401 ~ 5417899 (-) False pcbp3
XM_036958555.1 mRNA upstream 18042 5244401 ~ 5417899 (-) False pcbp3
TU2023362 other downstream 1450553 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 1773224 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 1898219 3325721 ~ 3326343 (-) True G1766126
TU2020381 other downstream 3796842 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 4004845 1218802 ~ 1219717 (-) True G1763459
TU2026425 other upstream 574402 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 733791 5960150 ~ 5960815 (-) True G1769618
TU2028322 other upstream 2025425 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 2235854 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 3398663 8625022 ~ 8641138 (-) True LOC110501323

Expression Profile