RNA id: XM_036958553.1


Basic Information

Item Value
RNA id XM_036958553.1
length 3083
RNA type mRNA
GC content 0.47
exon number 17
gene id pcbp3
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5244401 ~ 5417899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTGTGAATGCAAGTACTCCTTTCTCTCATTGTTTGAGTGACTGCAGGTATTGGTGTCTGCCTCTGaacgtgcgcgcgtgtgtgtgtgtctgggagtgtgtgtgttggagagggaaagagataaaaagagagagtgaggcgAGCAGTGTTTCTTTTCCCCCTCTAGCCTCCCCGTCTCCCTGCTCCCTGTCACTCCGTTCTTCCTCCCTCCCGGACCACCCTGCCTCCAGTCGGATAGACCCTGGACCTCCCCAGGACCCCCCTCCCATCACCCCTTTGACTCTCCTCACTTCTCCGACCCGCTTTGTCAACTGAGCAGTTTTTCCAACGAATCCAATATAAACCTGAAGAGGAACATATTATTGGACACTTAAACCATTTGAAGTGGTCACCAAGGAAGCATTGCTCAGGTAGAACGGCACTGGACAGACGGAAGTCTCCCCAGTCCTCTGGAAGGTTGACAGCACAAGGTCACATGACCTGGAAGAGAAAACCCAGGAGACTTTTGGGATCCCTTTTTGAATGGGCCGGTTATCAACCTGGAAACAAGTCTAAAGGCTGATGAACTGATCTGCACGGTCgtcccctctgctctctgccaACCGGCTCCATTAATGCCCTGAGAACCCACGGCCTAGCGCAACTCTGGTGACTGGCTGGCTACTGTACCATCACACTCCTCCCATTCCTGAGGAAACCCTCTTCACGaccacactcctcctctcttcacctccactCCCAGTATGGAACCCAACAAAGTCCAGCCAGAGGGCGGCCTCAATGTCACCCTCACCATCCGCCTCCTCATGCACGGCAAAgacaatgaagCAAATcacaccaccaggctgtgtaatggctacttgaccaaggagagtgatgggttgCTGCTTctgatgacctgtcctccacaatcacacaacctgaacccagttgagatggtttgggataagttggatcacagaGAGGTTGGAAGTATTATTGGCAAGAAAGGGGAAACAGTGAAGAAAATGCGCGAGGAGAGCGGAGCAAGAATCAACATCTCTGAGGGCAACTGCCCCGAGCGGATCGTCACCATCACCGGCCCAACCGACGCCATCTTTAAGGCCTTTGCCATGATTGCCTATAAATTTGAGGAGGATATAATCAATTCCATGAGCAACAGTCCAGCAACCAGCAAGCCCCCTGTCACTCTGCGTCTGGTGGTGCCAGCCAGCCAGTGTGGATCTCTCATTGGGAAGGGAGGTTCCAAGataaaggagatgagagagTCCACAGGGGCACAGGTTCAGGTGGCAGGGGACATGCTGCCTAACTCCACAGAGCGTGCCGTGACAATCTCTGGGACCCCTGAAGCCATAATCCAGTGTGTCAAACAAATCTGTGTGGTCATGCTTGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGCCTACACAATTCAGGGACAATATGCCATCCCACACCCAGATTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTCGGACAGACCACCCCTGCTTTCCCTGGTTTGGATACCAGCCCCCCGGCCAGTACTCATGAACTCACAATTCCAAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGCCAGATGTCTGGGGCGCAGATCAAAATCGCTAATGCCATGGAGGGCTCGTCGGAGCGCCAGATCACTATCACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAATGCAAGGTTCAGGGACGTGGCTGCCATGTGGAATGACCCGTCATCCATGACAACATCCTGAGGCCCAAATCTGGTTCCACTATCAAGAAGCTAACAGCAGCAACTGTCTCCCCAATAACCCCATGTATACTCCCACAGAACTTAATGGCTACCTGATTCCTTTAGCACTTGACACTTAATTAAGCTTTAGCAGCTTTGAATAGGCTAAAGAGGCAAAGTGTAAAGCAAAGTGAAAAAATTTGACTTGAATTCTGTTCATGTAATGTAAAGAGTTACGTATAGTGTTTCAGCATGCCGAATGCTTAGGATAATTGTTACATTATTTTTCTGTAGTTAATTGTCAGGCAATTAAAAATGGATAAAAAGtggaaaacaaaaaaatattgctATTCAGATTGCTACTGAGCAATGCTATTGGCCATGAGTCTTGAGTGATGTGATGCGTTTGTGAAGCGATATTGTTGCGTCAAATTTGGAATGAAAAGGAAGTACTTTTTATGTAAATAGTAAGGAGGTTTTGGAGGTTCTCCTTTTTGCAGGGAGACTTAAATTATTGAGTCAACAACTTCCAATGTGATAGAGGACTACGTTTAAACACACTATTTGTAGTTCAAGAGATTTAGGTGCAGGTTTTTCAATTAGGGAAAATCCAGAATTAGATTGGATTGGTTTTTATCAAAGTGCATCATAAAATCCATTTGCATGACCAATATACAATAGTAAATGTAACATGGAAACCTAAAAGCCGGAATGCTGCAGTTTCACTGTTGTGTGAAAGTGTCCAATCTCAGAATAGTTTTATTTCTCACTTTTTCCTTCAcccttcccttctcccctcttcctTAGCTATTCTAGGCTGACGTCTGAGGTCACTGGAATGTGAACACTAATTTCTACCCATCATTCTTCACTGCATCACACGACCCATGTGCCAATGGCATTGCACATTTATTTTTGTTCTCTGTATTTATCTGTCCTGCGCCTTTAAGTGATCCTAACTAATTTATTATATGTAAAGTAAACATGATACCCACACTGTTAACATGATTCTCCTCACCTGCCCTCAACCGACTATTCAAAGGACACTTTATTTTTTGGCATTATCATGTGCTTTACTGTAAATTCAGTTTATTTAATAAGTTTAAAACACAGCTATCGTGTTTTATGCGTGCTCATGATATATGCAGGGTTCGAGAGAGACTAACCATCCCAGAATTGTCCCGAAGTGCAATTTCAAACTCCCCAAAAAGAAAATAAACTGTCCCAAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2025625 lncRNA downstream 11479 5232542 ~ 5232922 (-) True G1768533
TU2025610 lncRNA downstream 24005 5220187 ~ 5220396 (-) True G1768518
TU2025605 lncRNA downstream 27275 5215218 ~ 5217126 (-) True G1768513
TU2025592 lncRNA downstream 37476 5206683 ~ 5206925 (-) True G1768500
TU2025590 lncRNA downstream 38626 5205568 ~ 5205775 (-) True G1768498
TU2026262 lncRNA upstream 235330 5653229 ~ 5704091 (-) True G1769139
TU2026323 lncRNA upstream 332238 5750137 ~ 5774381 (-) True G1769193
TU2026344 lncRNA upstream 361465 5779364 ~ 5779568 (-) True G1769209
TU2026364 lncRNA upstream 381947 5799846 ~ 5800107 (-) True G1769229
TU2026427 lncRNA upstream 385623 5803522 ~ 5804418 (-) True G1769283
XM_036959575.1 mRNA downstream 18042 5224562 ~ 5226359 (-) True lrrc3
XM_021578706.2 mRNA downstream 49061 5177787 ~ 5195340 (-) False LOC110501278
XR_005038767.1 mRNA downstream 49061 5177787 ~ 5195340 (-) True LOC110501278
NM_001197215.1 mRNA downstream 57785 5184849 ~ 5186616 (-) True trim63b
XM_021578697.2 mRNA downstream 326429 4794026 ~ 4917972 (-) True LOC110501274
XM_021578712.2 mRNA upstream 19138 5437037 ~ 5528181 (-) False LOC110501280
XM_021578714.2 mRNA upstream 20313 5438212 ~ 5528179 (-) False LOC110501280
XM_021578713.2 mRNA upstream 20313 5438212 ~ 5528181 (-) False LOC110501280
XM_021578715.2 mRNA upstream 20313 5438212 ~ 5612283 (-) True LOC110501280
XM_021578726.2 mRNA upstream 323381 5741280 ~ 5788668 (-) True LOC110501282
TU2023362 other downstream 1470392 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 1793063 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 1918058 3325721 ~ 3326343 (-) True G1766126
TU2020381 other downstream 3816681 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 4024684 1218802 ~ 1219717 (-) True G1763459
TU2026425 other upstream 382862 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 542251 5960150 ~ 5960815 (-) True G1769618
TU2028322 other upstream 1833885 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 2044314 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 3207123 8625022 ~ 8641138 (-) True LOC110501323

Expression Profile