RNA id: TU2026775


Basic Information

Item Value
RNA id TU2026775
length 3858
lncRNA type sense_over
GC content 0.45
exon number 5
gene id LOC110502106
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 6003661 ~ 6014297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGAGATTAAGAGTGATTCAGCCGGTCCTTgtaccatggcatcagagccagaccgaggctcctgtaGTGGAGGATTGGGTGAGCTGGAACCTGCCACCCTGATCCGCTACAGACTCTGGCCTGCCACCCCCCATCTGCCACAAACAGCAATTTCAGTGGTCCTCCTGCGCCAGTTTTGAGCCCTGCAGCTGGAGCGTGGGGTGTCTTTGAGGGGAATTACCTTGGTTTTTCACAAATCCAATGCATGTTGGAAGGTTGTTATTGTATTTTAAATTGGAAATAAGAAAAAACATGTATGTGTTTTTTACTGTGAGGAGTAGTTTTATTTTCATTCTATCTACAGACAGTTGAGTTCTACCGGAAGCTCAGAAATTAGTCATTTGAGGAGTTCAAACACTGGCAGTTTGAACGAGAGACTGTCAGGAAGATGGCGATACTGACCTTGGACGGAACAAAGTGTCCTCTCTGTCCACAGcaggtagcctagtggttagagtgttggactagtaaccgaaaagttgcaagattgaatccctgagctgacaagAAAAAGATTGCCTGGGACAAGCATTAAGGGTCCCAAACATGCTGGCAGCTGGATGGTTCTTTTGTGACCGAGACAAAGTCGACTGCTTTGTAGGAGGAGCATCAGACACACCAACTGAGGAGTGCCCGGGATTTCAAGCAGGGAATGTGCTGTGATCCAAACCCAAAACCCAAAAACTGGACATACAGTAACTGGTGTGTTTGGGATGGCGTGCAGGCACGAGCATCTACTGAAGTTCCTGAacctgaagagaggagagaagacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtgctgcttctgcctgcggctatggaaccctgaactgttcaccggacgtgctacctgtcccaggcctgctgttttcaactctctagagacagcaggagcggtagagatactctcaatgatcggctatgaaaagccaactgacatttactccggaggtgctgacatgttgcaccctctacaaccactgtgattattattatttgaccctgaaggtcatctatgaacacagccagaagagcacagccagaagaggactggccacccctcatagcctggttcctctctatgtttcttcctaggtttaggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgatatatccgctgatgtaagaagggctatataaatacatttgatttgatcttagtTTTTTGTGGAGGGACAGCTTGACTGGGCCAGTTTTCTTTCATTCCCTAACCAATTCTAGAGGAAACAATAGCAAGAAAACACAATGGTAAAGACTACTGCATCACATTTTCATGTCAGAGTTATTCAGCTTTTTATCTAGCAGATGATTGAAAAAGTATCCCTTATATACTAAGAGTTATCTTTATTGTTTCACAACCAGAGGGACAGTGATGGATGTTTTGAATCTGGGTTTTACCAGGCAATATGAAACTAGAAGCAAAATACAAATAGCTACCCGGAAAAGTTAAAATAACATAACAATCAACATTATTATCACAACAGCAGAGGACAGGATCCAGGATTTGCATGTTATGTTTTCAGAATTTGATGTCATAACCCTCTGATAGCTAGCCaaggggaagaggtagggagggagtgcATTGGGACCAGGTGAGGGAATCCAATAGCCCGACAACAATGGATGAATGAATACTTAATTGTTCCAAGGTGGCATTTGTTTGGGAATAATGGCACACATGTAACAAATCACAGAACATTCAACACTTCACTTAAATACAACATAAATATCACAGGACATACTTCACAAGACAAGGTCAGACAGACAAATTAGATAGAGGTATACTGTAGGTGCTGAATTATGGTTTAGTCTTCCTGGATTGAGGAACCTAGTGCTGGTTAACATGAATGACTTGTGTGCCCCGTTTGTTCTACAGAGTGGGGATTTGAACCTTTGGCCTGGCAGCAACTGTTGGTACTGGTAGTATAGTGGGTGTCTTAGTAACATTTTCTGGATTTATGGATGGTTCTTGATTTGTAGAGTGATGTGATGCTTTGAGACTTGACCCTGCTGAACCGTACCACTCAAGGAAGCAGAAGGTTAAGATGCTTTCAATGAATGTCTAATATAAAAGGtgaatctttgtgggctatactcagccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggagtgggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgaaatttgaATCATCAGTAAGGCCGTAGGAAGATTCCTAAGTAGTCCTAAGCCAAATGTTTTGTCCAGAACCCAGGGAGATATTACAAAAAGACAAAACCCTTTCTTATGTTCACAGAATACAAAACGTTAATGACCCTCACCTCCACCACTCTCCGACAGTCCAGTTCAGGTGGCTGCCTCAGCCATCAAAGGCGACCCTCTCCTCGTTATTCCCTGGTCAAATAAGGCTTTCAGAATCTCTCTTTGTTCATGACAAATGTATGATCTTCTTTATCTTAAGAACAgaattatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggacgaatactttcgcaaggcactgtatatacagagaaaggagtcggcccgagaattgaaccctttggtacccccatagagactgccagaggtccagacaacaggccctccgatttgacacactgaactcggtctgcaaagtagttggtgaaccaggcgaggcagtcattagaaaaaccaatgctattgagtctgccgataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2026780 lncRNA downstream 41365 5961640 ~ 5962296 (-) True G1769613
TU2026781 lncRNA downstream 42214 5961028 ~ 5961447 (-) True G1769614
TU2026772 lncRNA downstream 44846 5958597 ~ 5958815 (-) True G1769609
TU2026770 lncRNA downstream 46891 5956528 ~ 5956770 (-) True G1769607
TU2026767 lncRNA downstream 51522 5951923 ~ 5952139 (-) True G1769604
TU2026817 lncRNA upstream 43637 6057934 ~ 6058153 (-) True G1769650
TU2026741 lncRNA upstream 74063 6088360 ~ 6102892 (-) True G1769579
TU2026736 lncRNA upstream 78295 6092592 ~ 6119872 (-) True LOC110501288
TU2026858 lncRNA upstream 124363 6138660 ~ 6176150 (-) True G1769689
TU2027013 lncRNA upstream 279993 6294290 ~ 6294596 (-) True G1769840
trnas-cga-33 mRNA downstream 8014 5995566 ~ 5995647 (-) True trnas-cga-33
XM_021578733.2 mRNA downstream 8650 5970414 ~ 5995011 (-) True nabp1a
XM_021578732.2 mRNA downstream 8651 5970414 ~ 5995010 (-) False nabp1a
XM_021578731.2 mRNA downstream 35116 5963937 ~ 5968545 (-) False LOC110501285
XM_036958566.1 mRNA downstream 35116 5963937 ~ 5968545 (-) True LOC110501285
XM_021578734.2 mRNA upstream 4381 6018678 ~ 6042189 (-) True LOC110501287
XM_021578736.2 mRNA upstream 68083 6082380 ~ 6226566 (-) False LOC110501288
XR_005038962.1 mRNA upstream 839789 6854086 ~ 6855433 (-) True LOC118943629
XM_036958567.1 mRNA upstream 1089280 7103577 ~ 7157975 (-) False slc39a10
XM_036958568.1 mRNA upstream 1089280 7103577 ~ 7166042 (-) False slc39a10
TU2026785 other downstream 42846 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 178354 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 2229652 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 2552323 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 2677318 3325721 ~ 3326343 (-) True G1766126
TU2028322 other upstream 1237487 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 1447916 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 2610725 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 2722882 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 2722882 8737179 ~ 8743033 (-) True LOC110501325

Expression Profile