RNA id: XM_021578771.2


Basic Information

Item Value
RNA id XM_021578771.2
length 5293
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110501300
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7608184 ~ 7668624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTATTCGTATGTGCACCATAACAGAGCAAAAAGAGAGCGGGACTGGAGGAAAAGACATATGAAAAGAGATTTATAGAAGGAAACGAAGAAGAAAAAACACAAAGGAGAACCAGTGAAAATTAACTCTTCAAGCATTTTCAATTATCAGTTTAGGAAACTTTTATTCGTTGTGAAAAAAGGGACATTCCCGAAAACGATTGCCGCGTTCATGTGCTAGTCAGAACTTGTTAACTGGTTGAATTTCTACATGTGCCACGTTCAACCAGGTTGCAACTCGAAAATGTCAGAGTTTCCCAGTACCGACTAACGCGTGAACGCAGCATAAGCGGCAAGAATAGCTGCATCACATTACTCCGTTGCATGGCTGTCCAAAATTACATGAAAATCAAAACAGCCAACTAAAAGACCGCTGCTTTCTCGCGCTCatatagatggagagacagagcgCTCGTGAGCGATGGATGCGTGGATAGAGATGAACATTGGGTAGCGTCGGTAAAGATCCAAGGAGACTGGAAAGTGGACAGTAAATAATTGCAAACGGGGAGCTGTCAAAATAATGGATTTTAGCGTGCTACGGAATCTCATCAGCAGATACTGTGCGGGGGAGGAGTATTGGGTGGACAGTCGTACGGTTTACATCGGTCACAAAGAACCCCCACCGGCGGCCGAGGCCTACATCCCTCAACGTTACCCTGACAACCGCATCGTCTCCTCCAAGTACACCTTATGGAACTTCATCCCCAAGAACCTGTTTGAACAGTTCAGAAGAATCGCCAACTTCTACTTTCTGCTAATCTTCCTGGTCCAGctCATCATAGACACACCCACCAGCCCTGTCACCAGCGGACTGCCTCTCTTCTTTGTCATCACTGTCACCGCCATTAAACAGGGTTATGAAGACTGGCTAAGACACAAGGCAGACTGCAGTATAAATGAGTGTCCTGTGGACATGGTGCAGCAGGGGACGGTGGTGAGGACACAGAGCTCCAAGCTACGGGTGGGGGACGTTGTCATGGTGAGGGAGGACGAGACGTTCCCCTGTGACCTCATCCTCCTTTCATCCAGCCGCGGTGACGGAACCTGCTACGTCACCACTACCAGCCTGGATGGAGAGTCTAGCCACAAgACCTACTATGCTGTACCAGACACCATGGCCTTTAAGACAGAGCAGGAGGTGGACTCTCTGCATGCGACTATTGAATGTGAACAACCACAACCTGACCTCTACAAATTTGTGGGGCGCATCAATATTTATAAGGAAAGAGAAGATCCCATAGCCAGACCGCTGGGAGCTGAGAACCTTCTCCTCAGAGGAGCTACCCTGAAGAACACAGGACACATttatgCTGTAGCCATTTACACAGGCATGGACACCAAGATGGCCCTTAACTACCAGTCCAAATCCCAGAAACGCTCAGCTGTGGAAAAgtCTATGAATGCGTTCCTAATCGTGTATCTGTGTATCCTGATCAGTAAAGCGGTCATTAACACGGTTCTGAAGTATGCGTGGCAGTGGTCTGCTGACCGCGATGAACCCTGGTACAACCACAGGACCGAGATCGACAGAGAACGCCATGTGgtgatcAGGGCGTTCACAGACTTCCTGGCCTTCATGGTGTTGTTTAACTACATCATCCCAGTCTCCATGTACGTTACCGTGGAGATGCAGAAGTTCCTGGGTTCTTACTTCATAGCCTGGGACAAGGATATGTATGATGAGGAGCTGGGGGTGGGGGCTCAGGTCAACACATCTGACCTCAACGAAGAGCTcggacaggtAGAGTATGTGTTTACTGATAAGACAGGGACGTTGACAGAGAACAACATGGAGTTTATAGAGTGCTGTGTGGACGGACACGTGTATATCCCCCACGCCATCTGTAACGGACAGATCCTCAGTGCTGCTTCCAGCATAGACATGATCGACTCTTCTCCTGGAGGATACCGCAGGGAGCACGAGGACCTGTTCTTCCGGGCTCTGTGTCTGTGCCACACGGTGCAGGCgaaggaggaggagacagtggACAGCATCAAGAGAGGGATCCACCTGGGAAAGCCCACCTCCTTCTACATATCATCCTCTCCTGATGAGGTGGCTCTGGTGGAGGGCATGAAGAGGTTGGGGTACACCTATCTGAGACTCAAAGACAGTCATATGGAAATACTCAATAAGGACGATGAGATTGAAAGgtttGAGCTGCTTCATGTGCTGAACTTTGACTCTGTCAGGAGGAGAATGAGCGTCATTGTCAAGTCTagctcagGGGAGTACCTGTTGTTCTGTAAAGGGGCAGACACCTCCATCTTTCCCAGGGTGGTGTCAGGGAAGGTGGAGCAGGTGAGGGCACGGGTggagcagaatgctgtgGAGGGCTTACGGACCCTGTGTGTGGCCTACAGAAGTCTGTCCCCAGCGGAGTACGAGGAGGCATGTCATCAGCTGAGCGACGCCAAGCTGGCCCTGAAGGACAGGGAGCAACGGCTGGCGCAAGCCTATGACCTCATTGAGAGGGACTTCACCCTGCTGGGGGCTACGGCCGTGGAGGACAGGCTCCAGGAGAAGGCAGCAGACACCATCGAGTCTCTCCAAAAGGCTGGGATGAAGGTATGGGTGCTGACGGGGGACAAGATGGAGACCGCGGCAGCTACGTGCTACGCTAGCAAGCTGTTCCGCCGCTCCACACAGATACTGGAGCTGACCAAGAAACGAACCGAGGAACAGAGTCTACATGACGTTCTGTTTGACCTGAGCAGGACTGTACTCAGACAACGCTCCCTGTCAGGGCTGTCTGTGGAATGTCAGGACTATGGTCTGATCATCGACGGGGCCACCCTGTCTGCTGTGCTGAAGCCCAGTCCAGAGAGCTCTGGCTCGGGGAACTACAGAGAGATCTTCCTGGAGATCTGTAGGAACTGCAGTGCCGTGCTCTGCTGCCGCATGGCTCCCCTACAGAAAGCACAGATTGTGAAGCTGATCAAGGCATCtaaggagcaccccatcactctggCTATCGGTGACGGAGCCAACGATGTCAGCATGATTCTCGAGGCACACGTGGGCATCGGCATCATGGGTAAGGAGGGGCGCCAGGCAGCGAGGAACAGTGACTACGCCATCCCAAAGTTCAAACACCTGAAGAAGATGCTGTTGGTGCACGGACACTTCTACTACATCCGCATCGCTGAGCTGGTGCAGTACTTCTTCTACAAGaATGTGTGCTTCATCTTCCCTCAGTTCCTCTATCAGTTCTTCTGTGGATTCTCTCAGCAGCCACTGTACGACACAGCCTACCTGACGCTGTACAACATCAGCTTCACCTCGCTGCCCATCCTCCTCTACAGCCTCATAGAGAAACACATCAGCATAGAGATGCTCAAGAGAGATCCCACTCTGTACAAGGACGTAGCTAAGAACGCTCTGCTGCGCTGGCCCGTGTTCCTCTACTGGACGTGCCTGGGCTTGTTCAACGCCTGTATCTTCTTCTTTGGTGCCTACTTCCTGTTCGACAACACCACCTTCACCAGTAACGGACAGCTTATGACCACCAACACACAGATGatGTTTGGAAACTGGACCTTCGGGACTCTCGTCTTCACTGTGCTGGTGTTTACTGTCACGCTCAAGCTTGCCTTGGACACACACCACTGGACCTGGATCAACCACTTTGTCATCTGGGGCTCCCTGCTTTTCTATGTCATCTTCTCTCTGCTCTGGGGAGGCATCATCTGGCCCTTCCTGAACTACCAGAGAATGTACTATGTGTTCATGCAGATGTTGTCCAGCGGTCCGGCCTGGCTCGGCATCATCCTTCTCATCGCGATCAGCCTGCTGCCTGATGTGGTCAAGAAGGTCCTCTGCAGGACCCTGTGGCCCACCGCCACCGAACGCGCACAGAGGGTGAGGGCTGATGGCGTGCATGAGGGGAGTGTATCCCCGGCCACGGGCCCGGACCCCAGTCCTGTTGCTGGTGGtggaggcagtgagagagacaTGCTTTGCCCTGCTAGGACCtgtgagggggaaagaggaggtgaAGGGGTGCGAGCTGCCAGGACTTATGACTCCATGATGTCACACAACCCTAACTACCTTCTCAGCCAGCCCCTAGACCACGCCCCCTCAGATGgacattgaaaaagctgttgcagaGCAGTGTAGCAGAGTTGACCCCCGTGTCCTCTCGCCCTTCTGGCCCCTCCTCCAAACGGAAGAGCACTGACACCTCCCACCTTCACCTTGGGGTTCCAGGGCCCCGAACACTCCACAGGTCTGAGTTCTTCCCCCACAAACTTGTATTGTTCCACTGGGCTGATGGGGGTGGGGCAGACCTCCGCACCCTCAGCCTCTACGTGCTCCGTAAACTCGGGCTGGCTTTGCCTACTACCCACCAGGGCCAGAGACCTCTGTGTGACAcggacaggcacacacacacaaacacaggctgaTGTGTGAGCATACACAACGATGTGACCAAAATGTGACCTAAACCTACAAAGAATAGGGATTTGTGTTCCACTCATAAACAATGCATACACAAACGCTCACTAATTCTCACATACTCCTCGAACATGAAACATTTACCATGTGCATTGTCAGCCATTCGGAAGCGGATACGATTTGAGGCTTCcacatgcttcagttcggctggcgcCTTGCCGAGAATGTAACGAGTGCGCTTGCGTACTCCCTTAAGTCACTTGAAAAATCAATACAAAATGTATGTCCATTTTGAGATGCCGTAGCCAGCATACaattcctcaaaatagtcagaattaatctaagaaCTCGTGAAATTTTGACGCTTTTGCCGATGAGATCTTAAGTTGCGCaatttacatctaactaagatgtttggtgcagtgttTATCgatgaaaaaatgtgcatgaaaattaGTTGTcacgttgaatgacaacaaagactttattgaagaatccctactggtGACCAATCGCCGACTTCGGCTACCGACTTCGGCTTGTGTCCCTGAACAGCTGCAAAAACTCTTCCCGAAGTCCAAAAGGATAAAAATGTCAGAAAATGTCATTATAATACGTGCAcgaactgtttcggctgggaagcatgcggacgccttTGACCTCCAAGTTGCCTCCAATTGGTCCTGTCATAGTTCTATTTCAGTCTGGTCCTGATCCCAGTccacaccactactctactactgtgctattctattctactactttactactctattctactctactacacTACTCAATTACTCTACTCTTCTgctactttattctactctactttactatactacacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2028676 lncRNA downstream 7228 7598040 ~ 7600956 (-) False G1771387
TU2028817 lncRNA upstream 3462 7672086 ~ 7672326 (-) True G1771503
TU2028820 lncRNA upstream 4308 7672932 ~ 7673262 (-) True G1771506
TU2028840 lncRNA upstream 17871 7686495 ~ 7686723 (-) True G1771524
TU2028844 lncRNA upstream 21277 7689901 ~ 7690210 (-) True G1771528
TU2028845 lncRNA upstream 21814 7690438 ~ 7690675 (-) True G1771529
XM_036958591.1 mRNA downstream 10741 7526258 ~ 7597443 (-) True LOC110501299
XM_036958586.1 mRNA downstream 29467 7526258 ~ 7578717 (-) False LOC110501299
XM_021578776.2 mRNA upstream 50846 7719470 ~ 7736799 (-) True LOC110501302
XR_005038774.1 mRNA upstream 122698 7791322 ~ 7905094 (-) False arhgef7a
XR_005038775.1 mRNA upstream 122698 7791322 ~ 7905094 (-) False arhgef7a
XR_005038776.1 mRNA upstream 122698 7791322 ~ 7905094 (-) False arhgef7a
XR_005038777.1 mRNA upstream 122698 7791322 ~ 7905094 (-) False arhgef7a
TU2028728 other downstream 143492 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 351467 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 1647369 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 1782877 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 3834175 3447431 ~ 3774009 (-) True fgf14
TU2031399 other upstream 956398 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 1068555 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 1068555 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 1094668 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 1094668 8763292 ~ 8768047 (-) True LOC110502107

Expression Profile