RNA id: XR_005038776.1


Basic Information

Item Value
RNA id XR_005038776.1
length 7009
RNA type mRNA
GC content 0.51
exon number 30
gene id arhgef7a
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7791322 ~ 7905095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGCATCACAGTGAACTGCATCTGACAGCTTGCCAGGTTGGAGCAGGAGAAAAAACACCACACACAAGAGAGTAAACGACCGGTGGAACAGACCCGCTGTAATTTTCACAAACCGAGCATCATCCAAATCCACCCGGTAGAGACAATAAAGAAAAGAAAGGAGGGATATTTCGCGGTTACAGTCCTCCCACAAAGCTCGCATGTATGGAAtgataatgtttttgttttaacGCCCCAGATGATTGCGTACCAGGGGTAGCTATTGAAATACGCAAAAACCTGCCGCTTCGTTGGATTTTCCTCCGAGACTGAGGCCATGAATTCCGCGGAGCAGACGGTCACTTGGCTGATCACACTCGGGGTGCTGGAGTCTCCGAAAAAGACTATATCGGATCCAGAGGCATTTTTACAGACCTCCCTCAAAGATGGGGTGGTCTTGTGCAGACTGCTGGAGCGGCTGAGCCCGGGCTCCATGGACAAAATCTACCAAGAACCGAAGAACGACGGCGAGTGCTTGAGCAACATAAAGGAGTTTCTCAAAGGCTGCACTTCGTTTCGCGTAGAGCTGTTTGAGCCCAGTGATCTGCTCCTAGGACTGAACTTCTCCAAGATACTCAGCAGTCTGGTGGCTCTCAACAAAGTGACTGCAGATATTGGAGTGGGCAGTGACAGTGTCTGTGCCCGTCACTCGTCAGCCTATCGGATCAAGTCGTTTGAGTCTCTGGCCTCCCAGTCATCACTGGGTCGATCCTCCAAGCTGCTTCAGAACCAGTTCCGCAGCCTGGACATGTCTGAGGGCAGCGGGACGCAGCTATTGGTCAAGGCTCGCTTCAACTTTGAACAAACCAATGAGGACGAGCTGTCCTTCAACAAGGGGGATGTCATCAATGTGACACGCCAGGAGGAGGGCGGCTGGTGGGAGGGGAACTTCAACGGCAAGACCGGCTGGTTCCCTAGCAACTATGTCCGTGAGATCAAAGGCTGTGaCAAACAAGTGTCCCCCAAATCTGGGACCCTCAAGAGCCCCCCAAAAGGCGTTGACACTACGGCCATTAGCAAGACCTACTACAACCTGgtGCTGCAGAACATtctagaaacagagacagaatatTCCAAGGACCTCCAGAGCCTTCTGACCAACTACCTGCGATCACTCCAGAGCACAGAGAAaCTGAGCAGTACAGATGTGTACCTGATCCTGGGGAACCTGGAGGATATCAACACCTTCCAGCAGATGCTCGTCCAATCACTGGAGGAGTGCACCAAACTTCCAGAGAGCCAGCAGAGGGTAGGGGGCTTCTTCATGAACCTGATGCCCCAGATGAAGGCTCTCTACGTGGGTTACTGCTCCAATCACCCCTCGGCAGTCAACGTGCTCACCCAGCACAGtgaggAGCTGGGGGAGTTTATGGAGGGGAAGGGAGCCAGTAGTCCAGGTATCCTTACCCTGACCACAGGTCTCAGTAAACCCTTCATGAGGCTGGACAAATACCCTACACTAACGAAGGAACTGGAGAGACACATGGagGAGAGTCACCCCGACTGGCCAGACATCCAGAAGTGTATGACAACGTTCAAGAGCCTCTCGGCCCAGTGCCAggaggtgaggaagaggaaggagctgGAGCTGCAGATAGTGACTGAGTCCATCAGGCTGTGGGAGGGAGACGACATCAGGACACTGGGCTCTGTTCTCTACATGAGTCAGGCTCTGGTTAACAGCCCTGGAGCAGAGgagaaGTGTGAGCGCTACCTCATGCTTTTCCCTCATGTCCTCCTCATGCTGTCTGCCAGTCCAAGGATGAGTGGCTTCATATTCCAGGGGAAGCTACCATTGACTGGTATGACTGTGACCATGCTAGAGGACAGTGAGGCCCACAAAAACTCCTTTGAGCTTTCTGGCAGTCTATTTGAGCGTCTCCAGGTTGTGTGTAACAATCAGCAGGATCAGCAGGACTGGGTAGACCACCTGACCCGTCAGACCAAACACACCACTGTCCCCAGCCACAAACCCCTCACTGTCCCCTGCCACACGTTGCCCTCCCATCCTCTGACTCCGTCCCGTCACGCGGAGGGCCGGGCGATGACGGTGGCTCCTGCCTACCACACCCTGCCACACCCCTCCTCCCACGGGGCTCCACACAGCACCATGATGTGGGGGCCCCTGGAGCCCCCCAACACCCCCAAGCCCTGGAGCCTCAGCTGCCTGCGTCCCTCACCCCCTCTCAGGCCCTCTGCAGCTCTCTCCTACAAGGAGgacCTCAGTAAAAGCCCTAAGAGTGTGAAGAAGCTTCTTCCTAAACGTAAACCAGAGCGAAAACAGTCAGACGAGGAGTTTGCCCTGAGGAAGAGTACAGCTGCTCTAGAGGAAGATGCTCAGATCCTAAAGGTGATAGAAGCTTACTGTACCAGCGCCAAGACCAGACAGACCCTCAACtccaGGACGATGCGGAGGGACACAGGGCTGCAAGTCATCATCCCTGGAGAGGAGAAGATCATTGTGGAGGAGACCACGAGCAACGGACAGACTGTAGTCGGGGAGAAGAGCCTTGAGGATGTAGTGTACGCCCTGAGGGACGAGGTACAGGAGCTCAAACAGGACAATAAGAAGATGAAGAGGTCactggaggaggagcagagggcaCGGAAAGATCTGGAGAAAGTGGTCAGGAGGGTCTTAAAGACTATGAACGACCCCACCTGGGACGAGACTAacttatgagGCCAATATACACACACCAAATAGAAGAAAGCAAAGAAACGGAAGGATAAATTGATGGATGGAAGGATAAGCGAAAGACACTATCCTTCCCTTTAAAGAATATCAGGTGGAATTAAATCTGACAAAGACTCTTTGATTGAAATGGGAGTGAAGCAATGGGAGCGGAGCATCCAAATTCTCCAGAGAGGGGAAGTCTTTTTGAAAGTGTTGTGCAGCTGAAAGACATAGAGCGACACCCGGGACTTTACCTTTcattactggaggagaggagaggagaggaacatatTGCGGTCCAGAATAAAGAGTCTCTAAGGGTTCTTTCTACCTtgGTATGATAACAGGATCAGTGGCTGGCTGGGAGCATTGGGATGGAGCCAACGGAGGGATGATGTGagaggagtctctctctctccagatcacaatcccccctccctcctccccttccatgCCTGCACCTGATGGAGGgaggattaagagagagagagagagagagagagagcattagcAAAGATTGAAGCTGATCTTTACATTGTCCACTGGCTCTGGTTTAGTAGAGAtgactgcttctctctctctctctctctctctgtctgttttctccctctctctctctctctctctctctctctctctctctcgctctgttttctccctctctcttcccagtgTCTTTtcagcacagagagagggagagggaagattgttgggaggggaagagggagatgaGTTCAGCCATAGATTCCATGACCATTGTATGTcaatcatggtgtgtgtgtgtgtgtacagctatAGCCCCCTCTCTTTTCCCATCCCCTGGTGATTAGCTGTCAGTGGTGGCCTCTTgctgagagagcgacagagagagagagatgcagtaagGCCTTGGgaaggggggagagcgagagggagtgtgaaagaaaaagagagatatagagacagatACTGACAGAATGAGATGTGGGAGTGTAGAGCCTGAGGCTGCAGATGAACAGGAAACAGAAGAGAACCAAACAGAGAAAGTGACGGAGTGTTAAAACCTCTTTAGATCTCTATAAGAGGTTCTACTGTTGGTGAAATATAGGAACCATGGTCCTCTCTAGCTGTAATGTAGTTTACGGAGCAGGGATGCGCTTTGAGCATGTGGTCTCCTCTCCAGCTCCCATCAACCCCCAGGAGAAGATGAAGGGAGCTTTGAGTCTCTCAGGCGGAAGGTGCTAGAGACAGAATATTCAAAGGGCCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAAACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAAACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACTAACTACTCTTCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTAGCTCCTGAATCGCTAGCTAGACATGTAACCCTTTGGGAGAGAAACAAAGGGGCAAAGGCATATACGACCAACTACTCTCCACAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTATTCTCCAGAGCTTTCAGACCAACTACCCTCCAGAGCCTTCAGACCAAGTACTCTCCAGAGTCTTCAGACTAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTACAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCCTCAGAGTCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCCTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAAGTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACTAACTACTCTTCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTAGCTCCTGAATCGCTAGCTAGACATGTAACCCTTTGGGAGAGAAACAAAGGGGCAAAGGCATATACGGTTTGTCATTGCActcatttctttattttttatttttttacatttatataCTCTACTCTTGTATATGAAACCGTGAGAGAAGCACTGATGGTCACAGAACTATTTTTTTTGGGGCGATCTTGTTGTTTTTGTGATGGTTTTCAGACCAACTACTCTCCACAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTATTCTCCAGAGCTTTCAGACCAACTACCCTCCAGAGCCTTCAGACCAAGTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGTCTTCAGACTAACTACTCTCCAGAGCCTTCAGACCAACTACTCTTCAGAGCCTTCAGACCTACTCTCCAGAGCCTTCAGAGCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTACAGAGCCTTCAGACCAACTACTCTACAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCCTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACCAACTACTCCTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACTAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACCAACTACTCCTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACCCCTCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACTAACTACTCTACAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACTAACTACTCTACAGAGCCTTCAGACCAACTACTCTCCAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACTAACTACTCTACAGAGCCTTCAGACCAACTACTCTCCGGAGCCTTCAGACTAACTACTCTACAGAGCACAGAGAAGTAACCTCCACTGGTGGAAATATACTTTATTCACTATGTAACCCTTCACtatggctgtctgtctgtttgatgACATATAGCATATTATCCAGGGCCACTGGTTGGATTTACTGTACTCACTCCAAAACACATGCAACCTTCTCCCTGTAAAAGTCTCCCAGACTTGTATAAAAAGGAACGTGTCCATCCCTCTGTTCCCAGCTGATTCTGCTGGGCCATGGAACTCTAGAGCAGCACATCAAAAAACCTGCCACCCTGTTGCCAGCTATCGACGGTTCCCCGAGGAAAGATGCAACTGTCAAGGCTTTAAATGGTCAAATTTGGGGGATGACCACCAAATTCAATAAAGTTTTGCAGAAACTACAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2029192 lncRNA downstream 10736 7780117 ~ 7780586 (-) True G1771829
TU2029189 lncRNA downstream 11598 7775780 ~ 7779724 (-) True G1771827
TU2029174 lncRNA downstream 31034 7759887 ~ 7760288 (-) True G1771820
TU2029172 lncRNA downstream 35938 7755075 ~ 7755384 (-) True G1771818
TU2029163 lncRNA downstream 49017 7740125 ~ 7742305 (-) True G1771809
TU2029303 lncRNA upstream 50353 7955447 ~ 7955656 (-) True G1771935
TU2029310 lncRNA upstream 81398 7986492 ~ 7986710 (-) True G1771942
TU2029332 lncRNA upstream 111959 8017053 ~ 8076548 (-) True G1771961
TU2029365 lncRNA upstream 175158 8080252 ~ 8080793 (-) True G1771993
TU2029366 lncRNA upstream 175801 8080895 ~ 8081198 (-) True G1771994
XM_021578776.2 mRNA downstream 54523 7719470 ~ 7736799 (-) True LOC110501302
XM_021578771.2 mRNA downstream 122698 7608184 ~ 7668624 (-) False LOC110501300
XM_021578785.2 mRNA upstream 87191 7992285 ~ 7996837 (-) False mrpl30
XM_021578786.2 mRNA upstream 87191 7992285 ~ 7996860 (-) True mrpl30
XM_021578794.2 mRNA upstream 178723 8083817 ~ 8092847 (-) False si:dkey-4e7.3
XM_021578793.2 mRNA upstream 178723 8083817 ~ 8092866 (-) True si:dkey-4e7.3
XM_036958612.1 mRNA upstream 195651 8100745 ~ 8137580 (-) False inpp4aa
TU2028728 other downstream 326630 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 534605 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 1830507 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 1966015 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 4017313 3447431 ~ 3774009 (-) True fgf14
TU2031399 other upstream 719928 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 832085 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 832085 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 858198 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 858198 8763292 ~ 8768047 (-) True LOC110502107

Expression Profile