RNA id: XM_021578785.2



Basic Information


Item Value
RNA id XM_021578785.2
length 836
RNA type mRNA
GC content 0.46
exon number 6
gene id mrpl30
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7992285 ~ 7996860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACTGACGGCTTCCGGTGAGTGTCACTTGTCAACCAACAAGTAAATATGGCTATGCTATGTCGTGGTCTTCACATATCTTCCCCAATTCAGGCTTTAACAGAAACTACGCCCCTGCCTTGGTTAATTTCATTCCGAAGCAAGTTCACCAAAGCACGGATCCCACAAGAGATTCTGGAAGAGCGGTCTCAAGAGCATGAGAAGTATGGTGGAAACCAGGAGCAGCCCCATAAGCTGCACGTGGTGACGCGGGTCAAGAGCACCATGCGCCGGCCCTACTGGGAGAAGAAGCTAGTGGAGGGACTCTGCTTGCAGAAGGCGTATGTACCTGTAATTCACAAGAACATCCCTTCAGTCAACAACCAGCTGAAATTCATCAAGCATCTTGTGAGGATCCAGCCACTGAAGCTTCCCCATGGTCTCCCTGCTGAGGAAGACATGGCCGACACCTACCTGAACAGCAAAGGAGAGCTGATCGTACGACGCCTCCTCAAACCTGTAGAGTCCAAAGCCATCGAGTCATAGCCAACACTACTCTATACCCAAGCCATTTTGTCAGTGGTTCTGTTTGAATACTGAAAATGCATTCTCCCTTCCTCAAAGTAATCACTGACATGACTGGATTGGCTGTGTAGTGGATCCCATGCTTTCACCTATCCAATCTGTATAGAACACAAATTAATGGTTTTACAGTCTGGTCTACCAGAAATCAGCTGTGATTCAAATTACTATATTAGTGAAATCCCTGTACCTGTGTTCATTCTAGACCGAGAAACACTTCTATAGCTCACCCCTTTGTATTATATTtcaaataaaaacataacatGTACATGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2029310 lncRNA downstream 5575 7986492 ~ 7986710 (-) True G1771942
TU2029303 lncRNA downstream 36629 7955447 ~ 7955656 (-) True G1771935
TU2029258 lncRNA downstream 94181 7897837 ~ 7898104 (-) True G1771891
TU2029148 lncRNA downstream 124363 7789498 ~ 7867922 (-) True G1771795
TU2029192 lncRNA downstream 211699 7780117 ~ 7780586 (-) True G1771829
TU2029332 lncRNA upstream 20216 8017053 ~ 8076548 (-) True G1771961
TU2029365 lncRNA upstream 83415 8080252 ~ 8080793 (-) True G1771993
TU2029366 lncRNA upstream 84058 8080895 ~ 8081198 (-) True G1771994
TU2029367 lncRNA upstream 84474 8081311 ~ 8081929 (-) True G1771995
TU2029371 lncRNA upstream 96530 8093367 ~ 8093626 (-) True G1771999
XM_036958597.1 mRNA downstream 87190 7860010 ~ 7905095 (-) True arhgef7a
XR_005038774.1 mRNA downstream 87191 7791322 ~ 7905094 (-) False arhgef7a
XR_005038775.1 mRNA downstream 87191 7791322 ~ 7905094 (-) False arhgef7a
XR_005038776.1 mRNA downstream 87191 7791322 ~ 7905094 (-) False arhgef7a
XR_005038777.1 mRNA downstream 87191 7791322 ~ 7905094 (-) False arhgef7a
XM_021578794.2 mRNA upstream 86980 8083817 ~ 8092847 (-) False si:dkey-4e7.3
XM_021578793.2 mRNA upstream 86980 8083817 ~ 8092866 (-) True si:dkey-4e7.3
XM_036958612.1 mRNA upstream 103908 8100745 ~ 8137580 (-) False inpp4aa
XM_036958611.1 mRNA upstream 103908 8100745 ~ 8159515 (-) False inpp4aa
XM_036958613.1 mRNA upstream 103908 8100745 ~ 8159515 (-) False inpp4aa
TU2028728 other downstream 527593 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 735568 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 2031470 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 2166978 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 4218276 3447431 ~ 3774009 (-) True fgf14
TU2031399 other upstream 628185 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 740342 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 740342 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 766455 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 766455 8763292 ~ 8768047 (-) True LOC110502107

Expression Profile