RNA id: TCONS_00051265


Basic Information

Item Value
RNA id TCONS_00051265
length 911
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_026290
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21044154 ~ 21062778 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTACTAAGAGTCGCGGTGcagatttaaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACACAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGTACAAGCAACAGCACACTCTCCTACATAAAGTCAATGGAGCTCTTATGCTGGTCACTTTCTTCATCTG

Function

GO:

id name namespace
GO:0035264 multicellular organism growth biological_process
GO:0055088 lipid homeostasis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2046 Predicted to enable sphingosine N-acyltransferase activity. Acts upstream of or within central nervous system development; eye development; and lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in brain; central nervous system; epiphysis; head; and neurons. Orthologous to human TLCD3B (TLC domain containing 3B).

Ensembl:

ensembl_id ENSDART00000156275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052998 lncRNA downstream 131651 20901066 ~ 20915710 (-) True XLOC_026285
TCONS_00052997 lncRNA downstream 645637 20130274 ~ 20401724 (-) True XLOC_026283
TCONS_00052996 lncRNA downstream 645741 20130274 ~ 20401620 (-) False XLOC_026283
TCONS_00051241 lncRNA downstream 1054898 19986341 ~ 19992463 (-) False XLOC_026277
TCONS_00051278 lncRNA upstream 138650 21201428 ~ 21206946 (-) True XLOC_026295
TCONS_00052999 lncRNA upstream 1089829 22152607 ~ 22155523 (-) True XLOC_026303
TCONS_00053000 lncRNA upstream 1346012 22408790 ~ 22421923 (-) True XLOC_026308
TCONS_00053001 lncRNA upstream 1976730 23039508 ~ 23042675 (-) False XLOC_026310
TCONS_00053002 lncRNA upstream 1976730 23039508 ~ 23045222 (-) False XLOC_026310
TCONS_00051261 mRNA downstream 9521 21018053 ~ 21037840 (-) True XLOC_026289
TCONS_00051259 mRNA downstream 36382 20983395 ~ 21010979 (-) False XLOC_026288
TCONS_00051257 mRNA downstream 64869 20963162 ~ 20982492 (-) False XLOC_026287
TCONS_00051255 mRNA downstream 90278 20947560 ~ 20957083 (-) False XLOC_026286
TCONS_00051270 mRNA upstream 3537 21066315 ~ 21094525 (-) False XLOC_026291
TCONS_00051271 mRNA upstream 15472 21078250 ~ 21094437 (-) False XLOC_026291
TCONS_00051272 mRNA upstream 16636 21079414 ~ 21087959 (-) True XLOC_026291
TCONS_00051273 mRNA upstream 33249 21096027 ~ 21106093 (-) False XLOC_026292
TCONS_00051274 mRNA upstream 40055 21102833 ~ 21118969 (-) True XLOC_026292
TCONS_00051260 other downstream 49001 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051258 other downstream 64655 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051254 other downstream 253705 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051249 other downstream 941128 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051231 other downstream 1713730 19333504 ~ 19333631 (-) True XLOC_026269
TCONS_00051287 other upstream 554142 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051290 other upstream 1098673 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051313 other upstream 2319714 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051315 other upstream 2367467 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051337 other upstream 2755144 23817922 ~ 23818046 (-) True XLOC_026325

Expression Profile

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