RNA id: XM_036958656.1


Basic Information

Item Value
RNA id XM_036958656.1
length 5344
RNA type mRNA
GC content 0.53
exon number 28
gene id med14
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9165404 ~ 9205109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCCACCAAACCGTGATCACTTCCCGTCAGACTGCAAAGATGGCGGTTGAACAGCATTGAATCTTGTCTGTAATAAGCAATTAAAACGCGGGTATTTGCGACTTTTTTATGGGGCGAAGTCGCCGAGCCCCTACTAAATAACTATTTTGCGCGAAATGGTGTAGAATACGTGTAAGATTGGTACCAGTTCAAAGTTATTGCGAGTCGATAGTTTTACATTTTTTCGGTCTCCATCCGTGGAGCTTGCGTTATTTTAAAATGGCTCCGGTGCAGATTGGATCAGATGGGCAACTGGTCCCTATCGGGGGTCCCACCTCGGTCACCCAGCCGCCACCTCCCGGACCCCCGGCCACCCAAGGGGTCCGGCTGAGCCTGCTGATTGAGTTTCTCCTGCAGAGGACCTACCATGAAATCACCCTGTTGGGTGAACTTCTTCCCAGAAAAACAGACATGGAAAGAAAAATCGAGATTGTCCAGTTTTCCAGTCGGACCAGACAGCTGTTTGTGCGTCTCCTTGCCCTAGTGAAATGGGCCAGCAACGCCGGGAAGGTGGAGAAGTGTGCGATGATCTCCAGCTTTCTGGACCAGCAGGCCTTCCTATTTGTGGACACGGCTGATAGGCTGGCATCGCTAGCAAGGGACGCCCTGGTGCACGCCCGCCTGCCCAGCTTTGCCATCCCGTTCGCAATCGACGTGCTCACCACCGGGTCATACCCTCGCCTGCCCACCTGCATACGGgacaagATCATTCCTCCAGACCCCATCACTAAGGTGGAGAAGCAGACAACCCTGAACCAGCTCAATCAAATCCTTCGACATCGTCTTGTCACGACAGACCTACCACCCCAGCTAGCCAACCTCACCGTGGCTAATGGGCGTGTAAAGTTCCGTGTGGAGGGGGAGTTTGAGGCCACACTGACGGTGATGGGTGATGACCCAGATATTCCCTGGAGACTGTTGAAGCTGGAGATACTGGTGGAGGACAAGGAGACTGGAGATGGCAGAGCTCTGGTCCACAGTATGCAAGTGAACTTCATCCATGAGCTGGTGCAGTCACGCCTGTTTGCAGATGAGAAACCACTGCAGGATATGTACAGCTGCCTGCactcattctgtctgtctcttcagcTGGAGGTCCTCCACTCCCAGACCCTCATGCTGGTCCGAGAGCGCTGGGGAGACCTGGTGCAGGTGGAGCGCTACATGCCTGCCAAGTGCCTCACACTGGCCGTCTGGAAccAACAGGTCCTGGGAAGGAAGACGGGCACTGCGTCGGTCCACAAAGTCACCATCAAGATTGACGAATCGGACTGCTCCAAGCCTCTGCAGATTTCCCATGATCCTCCACTCCCTGCCTGCGACTCTAGACTGATGGAGAGAGCCATGAAGATTGACCACTTGTCAGTGGAGAAGCTTTTGATTGACAGCGTGCACGCCCGCTCCCATCAGAAGCTTCAGGAGCTGAAAGCCATCTTGAAGAGCAGCAACCCCAGCGACAGCTCGTTCATAGAGACAGCTCTGCCCACCCTGGTCATTCCAATCCTGGAGCCCTGTGGACGCTCCGAGTGCCTGCACATCTTTGTAGACCTGCACTCAGGGATGTTCCAGCCCATGCTGTATGGAATTGATCAGTCCATATTGGACGACATCGAGAAGACCATCAACGATGACATGAAGCGCATCATATCCTGGCTGCAGCAGCTCAAGTTTTGGTTAGGGGAGCAGAGGTGTAGACAGTCGGTGAAACACCTCCCCACTGTCTGCACAGACATACTACACCTCTCCAACTCCATCTCCCACCCTGCCGGCAGCCTATCAAAACACAGGCTCTTCATCCGGCTAACCCGCCTGCCACAGTATTATATTgtgGTGGAGATGCTTGATGTGCCTGGCTGTCCCACGGAGCTTCAGTACAAGTACTCCTTCCTTTCTGTGTCTCAGTTGGAAGGTGAGGAGGGACCTCCATGCGCCCAGCTCCTTCAGCACTTCAAACCCAACCTGGAGCAGCTCGTCCTGGACAATTGCGCCAGCCGTGGGGCCCGCCATGGCGCTAAGAGAAAAtTGTCAGGAGACCAGGGGGCTCTGGAGCCCAAGAAGCCAAAGCGCTCAGGGGAGATGTCTGCCTTCAACAAGGAGCTGGCTCACCTAGTGGCCATGTGTGACACCAACATGCCCTTCATAGGCCTCAGAGTGGAGTTATCTCAGATGGAGATTCCTCACCAGGGTGTGCAGGTGGAGGGAGACGGATGCAGTCATGCCATCCGCATCCTCAAGATCCCTCCCAGTAAGGGCGTAGGGGAGGAGACGAGGCAGGCACTGGAGCGCTCTCTACTGGACTGCACCTTCCGTCTGCAGGGTCGGAACAACCGTACCTGGGTCGGGGAGCTGGTTCTGGCCAACTGCCCGCTCAACAGCACACACAGCAAGGAACAAGcctcTACGCGCCACGTGTACCTAACCTATGAGAACCCTCTGTCTGAGCCTGTGGGAGGGAGGAAGTTGGTGGAGATGTTCCTCAACGACTGGAGCGCCATCAGCCAGCTTTACCAGTGTGTCCTGGTGTTCTCACGATCACTACCAGAGATGCCATCCTACCTGAGTCTGTTCAGTGAGATCCGGTTGTATAACTACCGCAAACTGGTTTTGTGCTACGGCAGCACCAAGGGCAGCTCGGTGACCATCCAGTGGAACAGTAGCACCCAGAGGTTTCATCTCTCTCTGGGGACAGTAGGACCCAACTCAGGCTGTAGTAACTGTCACAACATTATACTGCATCAACTGCAGGAGATGTTCAACAAGACCCCTACTGTGGTCCAGCTACTACAGGTGCTGTCGGACACCCAGGCCCCTCTGAATGCCATCAACAAGCTGCCCACAGTGCCCATGCTGGGGTTAACGCAGCGCACCAACACAGCCTACCAGTGTTTCTCCATCCTACCCCAGTCACCCACACACATCCGCTTGGCCTTCCGCAACATGTACTGCATCGACATCTACTGCCGCAGCCGCGGGGTGGTGGCCATACGAGACGGGGCCTACAGCCTCTTCGACAACACCAAGATCGTGGAGGGCTTTTACCCTGCCCCGGGACTCAAGacGTTCCTCAACATGTTTGTTGACAGTAACCAGGATGCTCGGCGACGCTCTGTCAACGAAGACGACAACCCGCCCTCGCCCGTGGGCGGTGACATAATGGACACCCTCATGAGCCAATTTCAGGCCCAGCAGCAGCAGACAATGAGAGGGGGTCCTGGGGGGGTGtaccctcccctcacctccccgCCCACCCCTTACCATCCCAACGTGGCACCCTCGCCATCCATGATGCCCACACAGTCCCCAGGTGCTCTGGACCCCAGCTCCCCTTATGCCATGGTGTCTCCCAGCCAGAGGGGCCAGTGGCCAGGCTCTCCCCAGGTATCAGGGCCATCTCCTGGGGCTCGTATCCATGGCATGTCCCCTGGAAACCCTTCACTCCACTCACCCATCCCCGACGCCTCACACTCCCCACGCACTGGCTCGAGTTCCGGGGCCATACCCAGCAGTATGCCCCCGCCCCGTAAGCTACCTCAGCGTTCCTGGGCTGCCTCCATCCCCACCATCCTCACCCACAATGCCTTGCACGTGTTGCTGCTGCCCTCGCCCACACCCTGCCTGGTGCCGGGCCTGGCAGGCAGTTACCTCTGCTCGCCGCTGGAGCGCTTCCTGGGCTCAGTCATCATGAGACGCCACCTGCAGAGGATCATCCAACTAGAACCCAACctgTCCATCGTGAACTCTAATGAGCCAGGTGTGATCATGTTCAAGACAGAGGTGTTGAAGTGTCGCGTGGCGCTCAACCCAAAGACCTACCAGACCTTGCAGCTCAAAGTCACCCCCGAGAATGCCGGACCCTGGTCACAGGAGGAGCTACAGGTCTTGGAGAAGTTCTTCGAGACCCGGGTGGCCGGCCCTCCGTTCAAGTACAACACGTTGAATGccttcaccaagctgcttggggCCCCCACCAACATCCTCAGGGACTGTGTCCGCATCATGAAGCTCGAACTGTTCCCTGACCAGGCCACCCAGTTGAAATGGAATGTCCAGTTCTGTCTGACCATCCCCCCCAGTGCCCCTCCCATCGCCCCTCCAGGAACTATTGCGGTGGTGCTCAAGTCCAAGATGCTCTTTTTCCTCCAGTTGACCCAGAGGCTGCCGGTGCCCCAGGAGCCGGTGAACATCATTGTTCCCATCGTATACGACATGGCCACGGGCCTGACCCAGCAGGCAGACATCCCGAGACAACACTCCTCCTCTGGGGCTGCAGCGCTCATGGTCTCCAACATCCTCAAGCGATTCAATGAGCTGCACCCCGCACGACAGGGTGAGTGCACTATCTTTGCCTCAGTTCACGAGCTCATGGTCAACCTTAACCTGCCCCCTGGTGGTCGCCAGTAGCAGCTGCACCTCCCTGGTCAGAAATGGAACGAGAACCAGAACCCAAACTCAATGCTTTTCCATTCTCAAACAGGGATACGTTCCTTTCCGGAGTCTAGTGAACTAGAGACGAAGTGTGCCCGCTGGATTTCCTAATGCAACATATCTCCTCTCTGCCTCAGCCAACTGACTTAaaactgattttttttgtttgttgaaaaAAGGGAGCAGAATTATGCAGAAGATGGTTTATTCTTGATAGAACACATGACTCCAATTAAGGAGCGTATCTTGAAAGAGAGAAGTTTTCGATATAAAAATAACTTCAAAGGCTGCTTTTACACAGGCTGCCTAATTCTGATATTCTTTTCcagtaattggtcttttgaccaatcacatccgatcattttcagagctgatctgattggtcaaaagaccaatttgtgaaaaatatataataattgggctgtgtaaatgcagccaaaaataaatatttttgtcTTTCTCCAGATGCACTTCTTTTCAAATGATTCAGAAATTAAGAATATGGGTGTTTACCTAAATATGTACATTGTTGTATATTTCAGCATTGAAAAGAATAATAAGCCAGTTGGATAAGTAAGACTTTTACTAGTGTGAGACTTCacattctttctttttttataatCCAAGATATCAATACTGTTGTGGTATTGGGGATGTATTCTTTCTTAATAaactatttaaatgtatttttcccTGATTGATGTCAAGACCTAGTCCCTTTTTAGTTCAAATGTGTCACTTTGAAATACTGTTAAACTGTGACAAACTTTATAAGCCAGCTGTATTTTATTATGACTGCTTTTGAGTCCTGAATGAAGAATCGAAGACCCATTGTCTGGCTTTGATTACTATTTAATAAACCAGTCAAAAACGTGA

Function

GO: NA

KEGG:

id description
K15156 MED14, RGR1; mediator of RNA polymerase II transcription subunit 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2031749 lncRNA downstream 6962 9156936 ~ 9158442 (-) True si:ch211-218d20.15
TU2031801 lncRNA downstream 9566 9155383 ~ 9155838 (-) True G1774150
TU2031786 lncRNA downstream 30135 9133349 ~ 9135269 (-) True G1774139
TU2031770 lncRNA downstream 42155 9112770 ~ 9123249 (-) True G1774133
TU2031758 lncRNA downstream 43016 9110343 ~ 9122388 (-) True G1774130
TU2031896 lncRNA upstream 123880 9328989 ~ 9332202 (-) True LOC110501351
TU2032039 lncRNA upstream 348915 9554024 ~ 9554342 (-) True G1774352
TU2032074 lncRNA upstream 430426 9635535 ~ 9735571 (-) False fundc1
TU2032085 lncRNA upstream 445984 9651093 ~ 9651451 (-) True G1774395
TU2032100 lncRNA upstream 462026 9667135 ~ 9667789 (-) True G1774410
XM_021578853.2 mRNA downstream 99 9156919 ~ 9165305 (-) False si:ch211-218d20.15
XM_036958658.1 mRNA downstream 99 9156919 ~ 9165305 (-) False si:ch211-218d20.15
XM_021578854.2 mRNA downstream 254 9156919 ~ 9165150 (-) False si:ch211-218d20.15
XM_021578855.2 mRNA downstream 262 9156919 ~ 9165142 (-) False si:ch211-218d20.15
XM_021578845.2 mRNA downstream 101884 9047968 ~ 9063520 (-) False gpr161a
XM_021578857.2 mRNA upstream 84242 9289351 ~ 9291953 (-) False rpl8
XM_021578858.2 mRNA upstream 84242 9289351 ~ 9291965 (-) False rpl8
XM_036958688.1 mRNA upstream 123879 9328988 ~ 9371716 (-) False LOC110501351
XM_036958689.1 mRNA upstream 123879 9328988 ~ 9371717 (-) False LOC110501351
XM_036958680.1 mRNA upstream 123879 9328988 ~ 9535226 (-) False LOC110501351
TU2031771 other downstream 42155 9101752 ~ 9123249 (-) False G1774133
TU2031767 other downstream 61965 9101752 ~ 9103439 (-) False G1774133
TU2031716 other downstream 102203 9058976 ~ 9063201 (-) True gpr161a
TU2031541 other downstream 397357 8763292 ~ 8768047 (-) False LOC110502107
TU2031837 other upstream 84170 9289279 ~ 9291975 (-) True rpl8
TU2032076 other upstream 530133 9735242 ~ 9737856 (-) True fundc1
TU2035106 other upstream 2635964 11841073 ~ 11843059 (-) True G1777196
TU2035206 other upstream 2835999 12041108 ~ 12041622 (-) True G1777286
TU2035374 other upstream 3063108 12268217 ~ 12270114 (-) True G1777441

Expression Profile