RNA id: TCONS_00006007


Basic Information

Item Value
RNA id TCONS_00006007
length 458
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_002623
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10319308 ~ 10332427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGTTCGTCGTGGCAACACCAGTATTGTTACGGGAGCCTGAGAAAAGCCTTCATAGGAAGGTGATAGTCCGTGCCATTCCATAAGAACCGTCCCATCAAGGCATTGCTGAGGGCGTGCAGGCTTTTCGAGCGACCAAACGCATCCCTCCTTCTTGCATTTGACCATTTTCTCCGCTTGCGTTAGTGAGGATACAGCTCCCGCGCGCACAGGACAGAGGCTTCCTTGCTTTTTCATCACCACTGCGTTGCAAGAAGACGCTTTGATTGAACACCATCGCTCCACGGCCATCAAAAGTGTCAAAATGGGACGACTGGAAATGCTTTTGGCTAGTTTTTCGGTCTTTGCAAATATCAGAAGATGATATTCCTTTGCCTGATGTCGAGAGGTGGAACTACAAGGATGTGCGCCCTTACAGatttgatgTATAAGGCACTAGTGTTGAGGAACCCTGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006006 lncRNA downstream 35826 10287455 ~ 10288683 (-) True XLOC_002621
TCONS_00006004 lncRNA downstream 35843 10261345 ~ 10288666 (-) False XLOC_002621
TCONS_00006005 lncRNA downstream 45976 10273729 ~ 10278533 (-) True XLOC_002622
TCONS_00004878 lncRNA downstream 308161 9915408 ~ 10016348 (-) True XLOC_002620
TCONS_00006003 lncRNA downstream 662817 9646362 ~ 9661692 (-) True XLOC_002619
TCONS_00004881 lncRNA upstream 233641 10564261 ~ 10578832 (-) False XLOC_002624
TCONS_00004883 lncRNA upstream 381558 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00006009 lncRNA upstream 381558 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006010 lncRNA upstream 453714 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00004895 lncRNA upstream 1001349 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00004875 mRNA downstream 305715 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004877 mRNA downstream 306389 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004876 mRNA downstream 308161 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004874 mRNA downstream 363021 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004866 mRNA downstream 914441 9397305 ~ 9410068 (-) True XLOC_002617
TCONS_00004882 mRNA upstream 233827 10564447 ~ 10607118 (-) True XLOC_002624
TCONS_00004884 mRNA upstream 530139 10860759 ~ 10863936 (-) False XLOC_002627
TCONS_00004885 mRNA upstream 530139 10860759 ~ 10864331 (-) True XLOC_002627
TCONS_00004886 mRNA upstream 548917 10879537 ~ 10969444 (-) False XLOC_002628
TCONS_00004887 mRNA upstream 550045 10880665 ~ 10969596 (-) True XLOC_002628
TCONS_00004869 other downstream 786183 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 1182830 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 1234873 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004855 other downstream 1307672 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004848 other downstream 1646681 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004903 other upstream 1430760 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 2974445 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 3276407 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 3281513 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 3600949 13931569 ~ 13931696 (-) True XLOC_002648

Expression Profile

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