RNA id: XM_036958763.1


Basic Information

Item Value
RNA id XM_036958763.1
length 1991
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110501414
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12648341 ~ 12683975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATTAATGTGACACGGTGTACATTAGGACAGCATTAATGAGACACGGTGTACATTAGGACAGCATTAATGAGACACGGTGTACAATAGGATCAGTCCAACAGGTGCCAGATGGTTTTACTAGTTCACATACCTGCACTTTTATTGGCCTCTCAGGTGAACTTTGGCCATAAGTCTGCACTGCACCAATAGCAGAGCTTTGTTTTTGTCATGGAGTTATTTTCTGTGTGTGGGAAGGGATATTACAAGTGCCTTGTTAACATATCAAGCTGGCACCATCTCGAAACGCGACTACTGCGTTCAGTAGTGAGACAGAGAAAACACTCTCTCTTCTTTTGCCATCTGTTGTGTTTGTTTCATTCTCTTGTTGTTGCTGGTTTacataagATAAAGAGGAACTCTTCCAGAATGTATTGACACAGGTGGCAGAGCAGTTTTCCAGAGCGTTTAAAATCAACGAGCTGAAGACGGAGGTGACGAACCGCTTGGCCATGTTGGAGAAGAGAGTGGAGTTGGAAGGGATGAAGGTGGTGGAGATAGAGAAGTGTCGCAGCGACATCAAGAAGCTCCGGGAGGAGATGGCCTCCCGGAACAACAGTCATTTCCTGGATGACAACAAGAAGCTGACACCTCGCAGAGATGTGCCCTCTTACCCCAAAtacCACCTGTCTCAGGAGACAGTGGAAGCTCTCAGACAACCCACCTTTGATGTGTGGCAGTGGGAGCCCAATGAGATGCTGAGCTGCCTGGAGCACATGTACCACGACTTGGACCTGGTCAAGGACTTCAACATGAACCCCATCACACTGAAGCGGTGGCTGcTTTGTATCCATGACAACTACAGGATGAATCCCTTTCATAACTTCCGTCACTGTTTTTGTGTCACCCAGATGATGTACAGCATGATCTGCCTCTGCAGCCTACAGGAGACGTTCACCCAGGTGGACATTCTGATTCTGATGACAGCTGCAGTGTGCCACGATCTGGATCACCCCGGATACAACAACATgtaCCAGATAAATGCACGGACGGAGCTGGCAGTACGCTACAATGACATCTCCCCTCTGGAGAATCACCACTGTGCCGTAGCCTTCCAGATCTTCTCCCAGCCCGACTGCAACATCTTCTCCACCTTTGACCCCGAGGCCTTCAAACAGATACgccagGGAATCATCACACTGATACTGGCCACAGACATGGCACGACATGGCGAGATACTGGACTCCTTCAAGCATAAAGTGGACAGCTTTGACTTCACTGATGAAGAGCATGTCACTTGTCTGAAGATGGTGCTCATTAAGTGCTGTGACATTTCTAACGAGGTGCGACCCATGGAGGTGGCTGAGCCCTGGGCGGACTGTCTGCTGGAGGAGTACTTCATGCAGAGTGACAGGGAGAAGGCAGAGGGTCTGCCTGTGGCCCCCTTCATGGACAGAGAGAAGGTCACCAAACCCACCGCTCAGATCGGTTTCATCAAGTTTGTCCTCATCCCCATGTTTGAGACCGTCATGAAGctGTTCCCTCAGATTGAGGATGTGATGGTCCAGCCTCTGAGAGAGTCGCGAGACAGATACGAAGAGCTCAAGCAGATTGACGATGCCATGAATGAGGTGCAGAAAAAGAAAAGTGAGAACTTGACTATGGGGAAGAAGAAATGAAAAGCACAAAGTGGTAAAGGTTGAGTCAGCATAGTCTGAGGAATGGGACCAGAGGAAGATGGAAACAGACCAAGCTACTTGACTGACTGGCCGGATGGACAATCCAAAAGCTTTTATCAGGGAATGTCGACTTGTACAGCAGACTACTTCAGTGAACAATATTTAGATtttctcttgtttttttttatgttgttttATACAGAATGTACAGATTTTTAGTTGCCTTCGTTGTTTCCTACAAAATAAAAGGTTTACTTTAATTATAACCTTTCacataatgtttttttattttgttttaaaacATATATTGCCATTATTAAAGCTTATTAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035485 lncRNA downstream 198604 12449117 ~ 12449737 (-) True G1777548
TU2035420 lncRNA downstream 302827 12344131 ~ 12345514 (-) False G1777484
TU2035419 lncRNA downstream 302827 12344958 ~ 12345514 (-) True G1777484
TU2035364 lncRNA downstream 371991 12257304 ~ 12276350 (-) True G1777433
TU2035652 lncRNA upstream 15808 12684507 ~ 12687011 (-) True LOC110501413
TU2035672 lncRNA upstream 41996 12710695 ~ 12711897 (-) True G1777721
TU2035693 lncRNA upstream 83833 12752532 ~ 12760242 (-) False G1777741
TU2035694 lncRNA upstream 83833 12752532 ~ 12760661 (-) True G1777741
TU2035696 lncRNA upstream 84887 12753586 ~ 12761087 (-) True G1777743
XM_021578962.2 mRNA downstream 12304 12627375 ~ 12636037 (-) True LOC110501412
XM_036958754.1 mRNA downstream 12349 12627375 ~ 12635992 (-) False LOC110501412
XM_021578961.2 mRNA downstream 23481 12620582 ~ 12624860 (-) False LOC110501411
XM_036958752.1 mRNA downstream 28140 12607309 ~ 12620201 (-) True LOC110501410
XM_036958751.1 mRNA downstream 28302 12607309 ~ 12620039 (-) False LOC110501410
XM_036958755.1 mRNA upstream 15509 12684208 ~ 12716650 (-) False LOC110501413
XM_036958756.1 mRNA upstream 15509 12684208 ~ 12716652 (-) False LOC110501413
XR_002470213.2 mRNA upstream 138008 12806707 ~ 12812450 (-) False LOC110501418
XM_021578978.2 mRNA upstream 161339 12830038 ~ 12836513 (-) False ifngr2b
XM_021578981.2 mRNA upstream 186931 12855630 ~ 12867235 (-) True LOC110501422
TU2035584 other downstream 23647 12620582 ~ 12624694 (-) True LOC110501411
TU2035374 other downstream 378227 12268217 ~ 12270114 (-) True G1777441
TU2035206 other downstream 606719 12041108 ~ 12041622 (-) True G1777286
TU2035106 other downstream 805282 11841073 ~ 11843059 (-) True G1777196
TU2032076 other downstream 2910485 9735242 ~ 9737856 (-) True fundc1
TU2036122 other upstream 500081 13168780 ~ 13172979 (-) False G1778140
TU2036123 other upstream 500081 13168780 ~ 13172979 (-) False G1778140
TU2036124 other upstream 500081 13168780 ~ 13172979 (-) False G1778140
TU2036125 other upstream 500081 13168780 ~ 13172979 (-) True G1778140
TU2036210 other upstream 610581 13279280 ~ 13330495 (-) True G1778224

Expression Profile