RNA id: XM_036958756.1


Basic Information

Item Value
RNA id XM_036958756.1
length 3245
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110501413
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12684208 ~ 12716652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAACACTTCTGAGGGGTTATTCCAGAAGGTTCTTGGCCATGTCTCCCAGGCCTAGTGTTGAGCTCACAGGGTTCTTCTGGCCAGAGGTACCGAGCCTTCACATTTAGCCTCACCTTCCTGCTGTACACCAGCTTCCACCTGTCCAGAAAACCCATCAGCATCGTCAAGAGTGAGCTGCATAAGAACTGCTCAGCTCTCAATGAGCTCTCCACAGCCAGTAGTAACCAGCTGCCAAACCTCCACACAGCTGCAGAGTGCAGCTGGAAACCCTTCGATAAAAGCAACTATAAGCAGCTGCTGGGAGCCATGGACTACTCCTTCCTCTGTGCCTATGCTGTGGGCATGTTCCTCAGTGGCATCATCGGTGAGCGCCTGCCCATCCGTCTGTACCTGACGTTTGGCATGCTGATGAGCGGCCTCTTCACCTGTCTGTTTGGCCTGGGCTACATTTACAGCATCCACAGCCTTGGCTTCTATATATTTGTCCAGGTGGCTAATGGCTTGGTTCAGACGACTGGCTGGCCCAGTGTTGTCACATGCATCGGGAACTGGTTTGGCAAGGGAAGGAGGGGTCTGATCATGGGCATATGGAACTCCCACACCTCGGTGGGCAACATCTTGGGCTCTCTGATCGCAGGCTACTGGGTCTCCTCCAACTGGGGCTTGTCCTTCATCGTTCCCGGCCTCATCATTGCTGCCATGGGAATCATCTGCTTCCTCTTCCTCATTGAACATCCAAATGATCTTAGAAGCATCCATGCTGTACAGAACCCTGCTCCCTGCAGGAACAATCAAAAGCTGACAAAGAACTGGAATGGGACGAATGGACACAAGCAACTGTACCATTCATACAAACAGGGAGACAAATATGAGaaCTGGGACACAGAGCTGCTGCTCCCTCAGGACAACAGTAGTGTTTCTGTCCCAGTAcagcaggtggtggtggtgaagagCGAATCAGAGCCCTCGGCCATCAGCTTCATGGGAGCTCTACGCATTCCGggaGTGATAGAGTTCTCGCTCTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACCTTCCTCTTCTGGCTGCCGCTCTACATCACGAAAACGGCTCACCTAGATGCCAAGAAGGCCGGAGATCTCTCCACTCTGTTTGACGTGGGAGGAATTGTGGggGGAATATTGGCTGGGGTCATATCTGATAAGCTGGGAAAGAGAGCCACCACCTGTGCAGTGATGCTGCTGCTGGCTGCTCCTATACTTTATGGCTTCTCCATGATCAGCGAGTTTGGACTGGGACCGACCATAGGTATGCTACTGGTGTGTGGAGGACTTGTGAATGGGCCATATGCCCTAATTACAACAGCAGTGGCTGCTGATCTGGGAACACACAAGAGCCTCAAGGGCAATGCCAGAGCCCTTTCTACTGTCACGGCCATCATTGACGGCACAGGATCAGTAGGTGCAGCAATAGGCCCCCTTCTGGCAGGAGTGTTGTCGTCACAGGGCTGGGATCAGGTCTTTTACATGCTGATGGCAGCTGACTTCCTAGCACTGCTGCTGTTGCTGCGGCTGGTGATGAAGGAGCTGACCTCTGGTAACGTGGTTAAACCTCGTTCTGGCAGCACCACTGTAGAGATGAAGGAGCACTAAGCACTTTGCACTAACTCCAGACCGAGAAGTGAAAAGACTGTGGCCCTCGCTCAGCACAGACACACTGCATCCTATACCACTACCCTGGACCGGACCTTTTAACTGAGATGACCTGAACCCACCCTGCCTGTGGTCACCTCTCAACCTTAACCCAATCCCTATAAACCAGGGCCCAGTTATCTGGATTTTAAGTCAATGATTTGTCTGTTCAATGAATATGCCTTTAATACTATCTGATAGTTTTTGAAACACTGAGCCCAAGACAATAGACAATGTTCACAAAGAGACATAGACAGGCAACACTTCTTTCTAAAGGTCTGTTGTCACTGCGAGCTTGGCTGTATCGCCGTCGATTCAGCAGTAGCTGACATGAACTAGTGTGTAGCAGCACCTATTGGAACCGAATGAAAGTCAATGAAGATGGAAGTAGCGGAGTAGAATAAGCAACCAACCAAGCCATCCAGTCCCTCTGAGCACATACCActttttatttagatttttttatatacatcTAGAGCATATTGGGCCCACTTCAGCCTTATGTAACCAAAGATTGTGGGGAAATGCACAGTAATttatatggagaaaaaaaaaaaacattctggtGGTCTATGTATTTTCTCTGTTTAGGAAGTATATGAAGGTACTGATATTTTGTGTTCCTATATGATCAGCAAATTATGGTACAGTTTGTTATGTTTTGGGACTTGAATGCTATGAATGTAACATTTTGTGTTTGAGTATGGAATTCTGCATATCAACTCCCGAGGAGGATCAACCATTTCTCAAATCAGTTATTTATGCAGTGCAATGTTAAACTGTGATAGTAAAAATAACAATGTGTAGAAAACACCAAATGCCATCATCCCAAACCTTAAAATGCTCACATTCATTCTGCCTTTGTGAACATTTTAAAGACGTTCCTGTGACTAATGCTTCCTACCTCCGAGTTTAAAGTGCCAAATGAGTGAAGAAAGGTAGCCTATGTACCTTCATGAAAAAGTAATCTATATTCTTATGAACTTTCATTCTGGCAGATGTGGTTAATTCCAATTCACCGGCCGTATttaactgaattgaaatggaagggACCCCATCCAGTAACGTGTCATTGTTCTTTGTGGCGATAGAGTATTTCTTGGTGGAAGCTGAATCATTATCGCAGTGCTTAAATGGTAGTACTTGAAATACTGTGTACCTTTTTTTTTGGTGTTTGTTCATTGGTCAGGCACTTGCTTTGTTCAGTTACTTGTCTGATTCTTACCTGACTCATAAGTACACGGTCTTGGTGACAATTGTCCATTTCTGAAGATATCTTGGTAGATAAATAAAAAGCGAGTGGCTGTGTTGCTGAATTCTCTGGAAGCTTCTTCACAAAAGATCTGTCTTGGTTTCTAAGCATAATGTTGAATTGTTTTGTTCACCAGGCTAAGTGTGTTCCAGTTAGGCTGAGTGGTCTCAAGTCTCCCAGCTGGAGGTGGCAGGTGGCAAACAAAATGTACACTTCTGAAAGCTAGTCCTCCACTCAGTgacacaggcaggcacacacaggcaATCTCTCTTTGTTTCTGAAAAGTACTGCAGGCCAAATCAAATATGAATTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035485 lncRNA downstream 234471 12449117 ~ 12449737 (-) True G1777548
TU2035420 lncRNA downstream 338694 12344131 ~ 12345514 (-) False G1777484
TU2035419 lncRNA downstream 338694 12344958 ~ 12345514 (-) True G1777484
TU2035364 lncRNA downstream 407858 12257304 ~ 12276350 (-) True G1777433
TU2035693 lncRNA upstream 35880 12752532 ~ 12760242 (-) False G1777741
TU2035694 lncRNA upstream 35880 12752532 ~ 12760661 (-) True G1777741
TU2035696 lncRNA upstream 36934 12753586 ~ 12761087 (-) True G1777743
TU2035695 lncRNA upstream 37116 12753768 ~ 12754430 (-) True G1777742
TU2035742 lncRNA upstream 71478 12788130 ~ 12788617 (-) True G1777781
XM_036958759.1 mRNA downstream 233 12648341 ~ 12683975 (-) True LOC110501414
XM_036958758.1 mRNA downstream 247 12648341 ~ 12683961 (-) False LOC110501414
XM_036958760.1 mRNA downstream 254 12648341 ~ 12683954 (-) False LOC110501414
XM_036958761.1 mRNA downstream 5185 12648341 ~ 12679023 (-) False LOC110501414
XM_036958762.1 mRNA downstream 5186 12648341 ~ 12679022 (-) False LOC110501414
XR_002470213.2 mRNA upstream 90055 12806707 ~ 12812450 (-) False LOC110501418
XM_021578978.2 mRNA upstream 113386 12830038 ~ 12836513 (-) False ifngr2b
XM_021578981.2 mRNA upstream 138978 12855630 ~ 12867235 (-) True LOC110501422
NM_001281380.1 mRNA upstream 151867 12868519 ~ 12887935 (-) True crfb5
XM_021578983.2 mRNA upstream 185323 12901975 ~ 12912653 (-) False LOC110501423
TU2035584 other downstream 59514 12620582 ~ 12624694 (-) True LOC110501411
TU2035374 other downstream 414094 12268217 ~ 12270114 (-) True G1777441
TU2035206 other downstream 642586 12041108 ~ 12041622 (-) True G1777286
TU2035106 other downstream 841149 11841073 ~ 11843059 (-) True G1777196
TU2032076 other downstream 2946352 9735242 ~ 9737856 (-) True fundc1
TU2036122 other upstream 452128 13168780 ~ 13172979 (-) False G1778140
TU2036123 other upstream 452128 13168780 ~ 13172979 (-) False G1778140
TU2036124 other upstream 452128 13168780 ~ 13172979 (-) False G1778140
TU2036125 other upstream 452128 13168780 ~ 13172979 (-) True G1778140
TU2036210 other upstream 562628 13279280 ~ 13330495 (-) True G1778224

Expression Profile