RNA id: TU2035745


Basic Information

Item Value
RNA id TU2035745
length 1483
lncRNA type sense_over
GC content 0.41
exon number 4
gene id ifngr2b
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12830038 ~ 12836513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCGTAGCTGTGTTGAAGTGACGTGAACATAGTTTTTCTCAATTGCACGTAGGTTTCGCTATAATGCTAGTCACAATGTAGTGATGTATAAGGTTATGTTGCCGTCGCATATAGCTCACTGATCGAGTAAaatgtgtgtgaaatgtgttttgtcGTTTTGGGCACTCTGTCAAGTCATCAAACAAGGAGTATGTCTCCAAATCCCCTGAGACCCTCCGAGGTCTGGAGATTGGGGGGAGGTACTGTGTACAGGTCCGCTATGTCTGTTACCACAACCCCTTTGGAACCTCTAGCCCCCTACAGTGTGTATCCATCCCAGAGTCAGAAAGGACAAGGCATATTAGGATTGTGGCTATCAGTGTGACCCTTACCATCCTGTTGGGATTCTTGGTAGTGGGCCTTGCGTTCATCTACAGGCACCATGAGAAAATTAAACAGTTCCTTCAACCCCCACTACAGCTACCAGACCACTATCGTGAGTACCTATCAGGGGACTTCCCCCAGCAGGCCCTGTCCATCACAAGAACAACCAGGGCCTGTGAAGAAAGCCACGATCTCATCTCCATCGCCTGCTGTGAAGAGGACCAGTCTGACAGAGAACAGGACTAATTCACCTACTGAACTGGAGTCATCCTCTGGCCCTTTAGATCATTACCCGTGATCCATTGATCCTGTGACTTCAGACAAGACATGAGCCTTTCACACTCACTGGGATTTTAAGATGAACTTGATAGCGTCAGTAAGTGAACTGTAGTAGGCCTATGACTGTTTACACTCTGAAGCCCTTGCTTGCATCAGCTACAAACATTGCGTTTGATCAAAAGATAACTATTTTACAAGAATCTGGGAACTTCTCTAGGCATGTTAGTatgctctgctgcagaggacagaGACAAGTGCATATGGCTCGCTAATTAGACCTACCCAGTAATGATTCATTTGATAATAACGTGTCATCAGGTCATCCAGCTTAAGACAGAACCACTTTATTAAAAAGTAATTTGACATGCGTCCTTGGGCCAGGACTTTCATGTAACATTTTGGCTGTTTAGTAATGGGATTACTATGTTCAACTGTGTATATCACACTATTTCTTCAGTTTTTTTTACTGAACATATTAGACAAGTACTAGTAGCAAGGTTAAGGCACATATTGTAATTTACTAATCAATTAAATTACAGTTTGAGGTATACATGGTCAAAAGTTGGCTGAGGGGCTGTATTAAAATGTGAAAACAGACATAGGACAAGTTCTTGAGATTTATCTATGCTTGCACTTTATATGAAAATTTACCTCTAGCAATATATTGATTGAATGTATTAACTTTTTTGTTGTGTTACGTTATGCTAAAACTGTTCAAGTCAAGGTGAAattggaaaagtgtgtgtgttacattgacTTTTGTTTTTGACTCTAAAAATGAATATTCTACATTGATGTGAAAGTGCCAGGGCTTTGACCCACAAATTATTTGATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035746 lncRNA downstream 190 12827037 ~ 12829877 (-) True G1777785
TU2035756 lncRNA downstream 17655 12806708 ~ 12812412 (-) True LOC110501418
TU2035742 lncRNA downstream 41450 12788130 ~ 12788617 (-) True G1777781
TU2035696 lncRNA downstream 68980 12753586 ~ 12761087 (-) True G1777743
TU2035694 lncRNA downstream 69406 12752532 ~ 12760661 (-) True G1777741
TU2035819 lncRNA upstream 82846 12919222 ~ 12919556 (-) True G1777848
TU2035824 lncRNA upstream 90730 12927106 ~ 12927330 (-) True G1777853
TU2035832 lncRNA upstream 96489 12932865 ~ 12933125 (-) True G1777861
TU2035836 lncRNA upstream 98880 12935256 ~ 12935504 (-) True LOC110502048
TU2035856 lncRNA upstream 151683 12988059 ~ 12988548 (-) True G1777883
XR_002470213.2 mRNA downstream 17617 12806707 ~ 12812450 (-) False LOC110501418
XM_036958756.1 mRNA downstream 113415 12684208 ~ 12716652 (-) False LOC110501413
XM_036958755.1 mRNA downstream 113417 12684208 ~ 12716650 (-) False LOC110501413
XM_036958759.1 mRNA downstream 146092 12648341 ~ 12683975 (-) True LOC110501414
XM_036958758.1 mRNA downstream 146106 12648341 ~ 12683961 (-) False LOC110501414
XM_021578981.2 mRNA upstream 19254 12855630 ~ 12867235 (-) True LOC110501422
NM_001281380.1 mRNA upstream 32143 12868519 ~ 12887935 (-) True crfb5
XM_021578983.2 mRNA upstream 65599 12901975 ~ 12912653 (-) False LOC110501423
XM_021578982.2 mRNA upstream 65599 12901975 ~ 12912654 (-) True LOC110501423
XM_021578986.2 mRNA upstream 76385 12912761 ~ 12919171 (-) False LOC110501424
TU2035584 other downstream 205373 12620582 ~ 12624694 (-) True LOC110501411
TU2035374 other downstream 559953 12268217 ~ 12270114 (-) True G1777441
TU2035206 other downstream 788445 12041108 ~ 12041622 (-) True G1777286
TU2035106 other downstream 987008 11841073 ~ 11843059 (-) True G1777196
TU2032076 other downstream 3092211 9735242 ~ 9737856 (-) True fundc1
TU2036122 other upstream 332404 13168780 ~ 13172979 (-) False G1778140
TU2036123 other upstream 332404 13168780 ~ 13172979 (-) False G1778140
TU2036124 other upstream 332404 13168780 ~ 13172979 (-) False G1778140
TU2036125 other upstream 332404 13168780 ~ 13172979 (-) True G1778140
TU2036210 other upstream 442904 13279280 ~ 13330495 (-) True G1778224

Expression Profile