RNA id: XM_036958783.1


Basic Information

Item Value
RNA id XM_036958783.1
length 2139
RNA type mRNA
GC content 0.50
exon number 10
gene id poglut2
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14132159 ~ 14156711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCCAATGGCTTTTCCATACTCCTTTGGTCCAATCAGCTTCCCGTTCTACCAGACGTTGTGGGGGCGACCAATCAGATTGCCAGGCTCGCCTGTCTGCGAATAACTTCTACCCAAACCGGCCAGGATTTTGTGTCCATGTATGTTTTATTATAAACTTTACCGATAAAAAATGTGACACAGCAAACTAATAGAAATGCGCCGTGTTGTGTATATGTGAGTATAGTATACACAAATCGAAACATTGCATCCGCATATTTGCCAGAAAGGGTGTTTCGCTGGATGTAGGCTATACACTGCTGGCGGCCAGATGTCGAATTATCCGGCGTTTCCTACATTTTACCGGGATGGTCATTTTTACAGGCTTGAAATTCCATTGTAAAATAGCAGTTTGGAAGAGACAAGGGACCAAAGCATTTTCAGAAGAACCGAGTCACAGAAACATGTTGCGTAAATTGCTTTCGTTATTTGTGTTGTGCTGTCTGGGGCTGTTGGAACATACACCTCCCGTGGCTTCAACCGGCGCGGTGCCCAGTGCTACAAGAACTTTGGTATGGGGTTCTGGACTCGAAGCAAATATTGTCCTTCCAGCTCGTTTCTTTTACATACAGACTGTGGACAGCTCGGGGAGAAATTTCACATCATCTCCCGGGGAGAACACATTCGAGGTGAAGATCGTGTCCCCAGTGGAACAGTTCACTAGAATCTGGGTGCAGGTTCTAGATCGCAGAGATGGTTCCTTTCTGGTGCGGTACAGGATGTATGCCAGCTACACAGACCTACACGTCCACATACTGCTCAACGACAAGCATGTTGCGAAGTCCCCATTCATTCTGAAAGGTCCAGTGTACCATGATGGTTGTGACTGTCCTCAGCCCAGTGGTTCTGTGTGGAAGAAGGACATGCAGTGCCCTGTGTCCTTCCCTCAGATAGAGCAGGACCTGGCCCTGTTCCCCAGGGTGGACCCAGACCGCAACGCCCTGGAGGTGCCCCAGCGTTTCGGACAGAGACAGAGCCTCTGCCACTACACAATCAAAGACAACAAGGTCTACATTAAGACACTAGGGGAGCATGTGGGATTCAGGATCTTCATGGATGCCTTCCTCCTCTCGCTAACCAGGAAGGTGCGGGTCCCAGATCTAGAGTTCTTTGTGAACCTGGGGGACTGGCCCCTGGAGAAGAGGAGGCCCTCAGAGAGGCTCCACCCCATCTTCTCCTGGTGCGGCTCCAATGACACCCGCGACGTTGTTATGCCAACCTACGACCTCACCGAGTCGGTCCTGGAGACCATGGGAAGAGTGAGTCTGGACATGATGTCGGTCCAGGCCAATACGGGGCCTCCGTGGCGGGAGAAGAACGCCACAGCGTTCTGGAGGGGGCGGGACAGTCGCAAGGAGCGCCTGGAGCTGGTGAAGCTGGCCAGGGCTCATCCCGACATGGTGGATGCAGCCTTTACCAACTTCTTCTTCTTCAAACACGATGAGAGCCTCTACGGACCGCTGGTCAAACACGTCTCCTTCTTTGACTTCTTCAAGTACAAGTACCAGATCAACATAGATGGCACTGTGGCAGCCTACAGACTGCCCTACCTGCTGGCTGGGGACAGTGTGGTGCTGAAGCAGGACTCTGGTTACTATGAACACTTCTACAGCCAGCTCAGACCCTGGGAACACTACATCCCCATCAGAGCAGACCTGGCTGACCTGCAGGAGAAGATCCATTGGGCCCGTGAGCAAGATGAGGAGGCAAGAAAAATCGCAGTAGCCGGTCAACAATTTGCCCGAAATCATCTAATGGGCGACAGTATATTCTGCTACTACTACAAACTCTTCCAGGAGTATGCCAAGTTGCAGGTGACTGAGCCTAAGGTCAGAGAGGGCATGGAACAGGTCGAGCAGCCCAATGATGACCTCTTCCCATGCTCCTGCCACCGGACACCACAGGTCAAGGATGAATTATGATTTGTCCACTGTTCAATTATAAAACAATCGCATTTTTATCGGATGTTCCTGTGctgtaaaatgtttgtttttttttgggggggggggcaaaatgtGAATTGTGGGCTTGTCAGTCACCCTAACCATACATGATTGTTAGTTTCCACATGTTTATAATAAATATTTTTTCATTGTATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2037883 lncRNA downstream 13449 14118439 ~ 14118710 (-) True G1779818
TU2037872 lncRNA downstream 23541 14107240 ~ 14108618 (-) True G1779807
TU2037864 lncRNA downstream 49257 14082635 ~ 14082902 (-) True G1779799
TU2037863 lncRNA downstream 52209 14079504 ~ 14079950 (-) True G1779798
TU2037752 lncRNA downstream 193579 13938147 ~ 13938580 (-) True G1779688
TU2037949 lncRNA upstream 42074 14198778 ~ 14303481 (-) True G1779863
TU2037980 lncRNA upstream 94000 14250704 ~ 14251221 (-) True G1779894
TU2038085 lncRNA upstream 262502 14419206 ~ 14419417 (-) True G1779995
TU2038086 lncRNA upstream 264793 14421497 ~ 14421878 (-) True G1779996
TU2038087 lncRNA upstream 265918 14422622 ~ 14422858 (-) True G1779997
XM_021579000.2 mRNA downstream 555 14127591 ~ 14131604 (-) True tex30
XM_021578999.2 mRNA downstream 4701 14120807 ~ 14127458 (-) True nepro
XR_002470293.2 mRNA downstream 288830 13838464 ~ 13843329 (-) True LOC110502113
XM_021578988.2 mRNA downstream 1156314 12963389 ~ 12975845 (-) True LOC110501426
XM_021578989.2 mRNA downstream 1165894 12963389 ~ 12966265 (-) False LOC110501426
XM_036958785.1 mRNA upstream 490 14157194 ~ 14392227 (-) False stxbp5l
XM_036958786.1 mRNA upstream 490 14157194 ~ 14392227 (-) False stxbp5l
XM_036958787.1 mRNA upstream 490 14157194 ~ 14392227 (-) False stxbp5l
XM_036958788.1 mRNA upstream 490 14157194 ~ 14392227 (-) False stxbp5l
XM_036958789.1 mRNA upstream 490 14157194 ~ 14392227 (-) False stxbp5l
TU2036210 other downstream 801664 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 959180 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 1410799 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 1529152 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2900418 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2900418 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3712825 17869529 ~ 17903951 (-) False G1783895

Expression Profile