RNA id: XM_036958789.1


Basic Information

Item Value
RNA id XM_036958789.1
length 7539
RNA type mRNA
GC content 0.48
exon number 28
gene id stxbp5l
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14157194 ~ 14392227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTCGCGCTAGACTGCAGAGAATCAGTTCTAGGGGACAGGGCTGCATACAAACGCTGGATCCTCGACAATTCGGGTATAAACTTAATTTGACTGATTCAACTCTCGTTTACCTGTTCCTCTCCTCAGTTCGTGCAAGGGTTTACTTTATTTTTTAGTTGTAATACCAGCGAGTGGAAGCGAGCTGCATTTAGCTGCATTTTCTCTCTGCATAGACCTGCTTCACTCTCCATCCAGTCAAAAAGTgcgattaaaaataaaataaaaacattgttaaGGTAGTGTATTGGTAAGTGTTTGAACTTTAGCTGATTATATATCTAGTTAGTCTCTCATAACTGCTGCAGTGGTTGATTAGGCTATTGTATTGTAGTTTGTGTTTTGCCTTCATGCTTTATAGTGATGCAGTTTCAGCAGGCTAAAGAAACATGACGTTTCTTAGTTTAAATCTTTGCTGGGGCATGCTCTTTTGATGCGCAATATACATCCATTTGCAATTGGCGAATCTCTTTTACCTAAGTATCCTCCTCAAACCAAGATAAACAGTTTTGTGGACAGAAGCCTAAGTGCACAATGAGGTCCCTCCACGACTTTTTCAATTGCACTTaaaaagaagagggagagagagggcgagagagaggctgCAGGAAGCGACGCCTGCCAACCCTCAGGGGTTCCTACATCAAACAGACTCTCGCGTCATCTTAGCATTTGAAACGGAGACGACTCTTGATAGGTTGATAGAATATATAGACATAGAAGTCTTTCTCGCTAACCTAAAGCAAGATGAAGAAGTTTCGAAAGGTACTGGACGGCCTGTCATCCTCCTCCCCGGGGGGTGTCGCGTCCCCTTCGTGCGGCAGTGCAGCTGGTACCCCGACCGCTCATGCGCCCACTCCCCAGGATATCCATGTCCAGGAGACGCTAGTCTCGGAAAACTTTCAGATATGCAAGACGGTACGCCATGGCTTCCCGTACCAGCCCACCTGCCTGGCCTTTGATCCCGTCCAGAAGATCCTGGCCATCGGCTCCAGAACAGGAGGCATTCGGATccTGGGACGGCCTGGTGTGGACTGCTATAGCCAGCATGAAAGTGGAGccgctgtcctccagctacagtTCCTCATCAACGAGGGGGCGCTGGTTACGGCATGTGCAGACGACACGCTACACCTGTGGAACCTTCGCCAGAGACGCCCAGCCATCCTGCACTCGCTTAAATTCAATAGGGAGAGGATCACTTTTTGCCACCTCCCCTTCCAGAGTAAATGGCTTTACGTGGGCACAGAGCGTGGCAACACACACATCGTCAACATCGAGTCCTTCGTTCTGTCTGGATACGTCATCATGTGGAACAAGGCCATAGAATTAGCAACTAAAGCACATCCAGGGCCCGTGGTCCATCTGAGTGACAGCCCGAAGGATGAAGGCAAGTTGCTGATAGGGTTTGAGAGTGGAACAGTAGTCCAATGGGACCTCCGAGCCAAGAAGGTTGACTTCAGAATCTACTACGATGAGGCTATCCATTCTGTGAGCTGGCATCACGAGGGGAAACAGTTCATGTGCAGCCACTCAGATGGCAGCCTGACTATGTGGAACCTGAGAAACACAGCCAGGCCCATTCAGATCACCTACCCTCAcgGGAAGATACTAAAGGACGGGAGAAAAGAGTCGTGTAAGCCCATCCTCAAGGTGGAATACAAGACCTCCAGGAACAGCAGTGAGCCCTATGTCATCTTCTCTGGGGGTCTGTCATATGACAAGTCCGGTGGAAGGAGGCCCACCCTGACCATCATGCACGGCAAGGCCATCACAGTGCTGGAGATGGACCACCCTATCGTAGAGTTCCTAGTACTCTGTGACACCCCATATTCCAACGAGGTCCAGGATCCTTATGCAGTGGTTGTGCTTTTAGAAAAGGACTTCATCGTGGTGGATCTGACACAGAGCAACTTCCCCATCTTTGAGAACCCCTACCCGATGGACATCCACGAGTCTCCTGTCACCTGTACGGCTTACTTCGCTGAGTGCCCTCCTGACATCATCCCCATCCTCTACTCCATAGGGGCCAAGCAGAAGAAGACTGGCTACAGCCACAAGGAGTGGCCAGTGAGCGGTGGCACATGGACACTAGGCTCACAGACCTACCCAGAGATCATCGTCACAGGACACGCAGACGGAACCGTAAAGTTTTGGGACGCCTCTGCTATTACACTGCAGATGCTGTACAAGCTGAAGACGTCCAAGGTGTTTGAGAAGCCCAAGGCGGGAGAGGGTCGGGCGGGCGAGCTGGTAGAGGAGGACCCCTACGCCGTTCAGATGGTCAGCTGGTGCCCACATAGCCGTCTCTTCTGTGTGGTGGGCATTTCTGCCCACGTCATCCTCTACCGGTTCAGTAAACACGACGCCAACACGCAGATAGTGTCACTAGAGGTGCGCCTGCAGTTTGATTCAGAGGACGTCATCTCCCCGTCAGAGGCAGAGAACAACCCGTGTTTCTCGGACCCCAGTTCCCACTCCCCCCAGCCGCCCGGTAGCCCTGGCAGTGGCACACAGGACAGCCTCCCCTGCCTCAAGGTGAAGAGTCGTCCAGTGCGGATGCCCCCGGGGTACCAGGCTGAGATGGTGGTGCAGCTGCAGTGGGTGGATGGAGAGCCCCCCCAGCAGATCACCAGCCTGGACATCAACTCTGCCTACGGCCTcctagCGTTTGGGAACTGTAATGGTCTAACGGTGGTGGACTTCCTTCAGAAGACGATCCTGATGTGTATGGGCACACTGGACCTGTACGGAGCCGCAGACCCCTACCAACGACTCACACGCTCCCCACGCAAGAACAGACAGTCCACCTCAGACTTTTGCATGCGTGGCCTGTCTCACTTTTATTCAGATTCAAAGAAAAGGATCCGTACGTCCTATCAGAGCCTTACAGAACTCTCCGATAACCAGGTATCCATGGACATGGAGAAAAGCAAGTCACCCACCTCAGATCATGTCAATGGACATTGCACTAGTCCTACCTCCCAGCCCTGCTCCGTGGGGAAGCCTCGCATCACAGGGGTTTCCGAGGGCCCGCGGCTCACCCGGAGAGGGCCTGGCCGACCGCCCTTCCGCAAGGCCCAGTCCGCCGCTTGCATGGAGATCTCTTTGCCTGTTTCCTCCCACACAGAAGGTGGCCATGCGTCCAGGAGGGCAATGCTTCAGCAGTTGCATGGAGTCAGTATGTACTCCCACGACGAGCACCACACCACCTCCTACAACTGGAGCGAGAgagAAAGTAGAGAGAACTCATTCAGTCGCTCGCGGAGCTCCAGTGTGTCCAGCATTGATCGCGACACCAAGGAGTCAGTGACCACGCTGCAGTTCGGAGAGTCCTACGGCCGTAAGGGCGATGCTCTGCCTACCGCCTGCCTGTGGGTGGGCACCAGCCTGGGCGTGGTCCTGCTCCTGCCCATATCCATCCCcacagaagaggaggagaggatggaggagccCATCACCATGGGGCCCAGTGGTACCGTCCTGATGCTAAAAGGCTCTGTGTTGCGATTTGCCTTCCTGGACTGTGGGGGCGCTCTCATTCAGAGTCCCTACGAGGTGTGGCGGGACCCCAACGGTCCCGAGGACCCAGACCGGCCCCGCAGGCGCAAGCTGATCAACTTCTCCCCGTCATCATCCCAGGAGGCGTGCGGTGACGGTCACCTGGCCGTTGTGTGCTCTGAGAAGCAGGCCAAGGTCATCCTCATGCCCACCCAGGCTgtcctgttcacccacaacatCACAGAGTCCTCCTTCCTCCTGCGGGCTGACGTTGTCTCCGTCTGCAACAGCGTCTGCCTGGCCTGCTTCTGCGCCAATGGACACATCATGACCCTAAGTTTGCCCAGTCTAAGACCCCTGATGGATATCAACTACCTTCCCCTGACCGACTTGCGTATCGCCCGGACCTTTGTCTTCACTAACGGAGGCCAGGCCCTGTATCTGAGCTCTCCTACAGAGATACAGCGTCTCACATACAGCCAGGAGATGACGGACAACCTACAGGACATGCTGGGGGAGCTGTTCACTCCTATAGAAACACCAGAGGCCCAGAACAAAGGATTCCTCAAGGGCTTCTTTGGGGGCAACGCCCAGACCTTCGACAGAGAGGAGCTGTTTGGGGAGGCAGCAGCGGGAAAGGCCTCTCGGAGTTTGGCCCAGCACATCCCTGGTCCAATGGGATTGGAGAACATGAAGGCTGCAGCCGGCGGCGTCGTGGGGGACCTGGCCCGAGCCCGCATCGCCctggaccagagaggagagagactgggcgaGCTGGAGGAACGCACCGCCCTCATGATGAACAGCGCCGAGACCTTCTCCACACACGCCCACCAGGTGATGCTGAAACATAAGGACAAGAAATGGTATCAGCTTTAAAGGCAGGACAGCGGGCTGTGACTGCCCCTCcacctggtgggggggggggggcactatgCTGGGACATGGACCTTTACTCGACGGACATGAGagcgatagagatagagagagacacaagagGGACTTTGTGTTAACGggcctctctgtaggccgtctgTACATCATTGTCACAAGACTTGGACAGAGGGCAGTCACTTATCTAGACTATAGTGAGATGGACACAGACCAGGAAGTAAGTTGGTACGACAGGGGGAACCCAAAGTAGATGATGACAGTccatcagtgtgtgtgggtgggttacCCAGATCTTGCTGTGTAGATACTCTAAAGTTAATAATCCAACAAGACTGCATGAAACTAAACAGATAATTACAAAAAAAAGTAGAACTGCAATATTAAAAAGCAGCATGCTACTTTAACAGagggaaataaaacaaaataaaacttTTATTTAATAATATAAGCCAACAACAGAAAGTATGAAAAAAACTTTATATTTTTTGAAATATGGAAAAAAAGATATATAAAAACGAAAATGTATTCCTGCATAGCTATAAAGCCACATTTTTCTGTTTGCCTTTTTTTTCTTACTTTCATTTGGTTTTTGAACACATTCTGAACACACATCATTTCAGTTTCAATACTTTCTTTACTCAATACTACTAATGATGATACTATTCATATTCCCACCATTAGACACTGAGCTCAAACTATATCGTTATCCAAGATCTCTGTGGTGTACTCACAGTGCAAAAACACAATCTAGTCTTTCAACATATCCACACATTCTGAACAACTGAATTGTCAATTTTACTGGCACTAATTTCATTCTCTTGGCTGCTACTACTGACTAGACCTGTTACCAGGGAAAAAAAAGGTACATTTCACCCCCCCTGCCAGAAATGTGTGAACACAGAGAATATATTGATTAATAATGTGTGAACACAGAGAATATATTGGTTAATAATGTGTGAACACAGATAATATATTGGTTAATAATGTGTGAACACAGAGAATATATTGATTAATAATGTGTGAACGGTCATGGAAATTAGTTGTGTTGGCTGAGGTGCCACGGTGATAGTAGACTGTGAGGTCTGGATTGAGTGTGTTTATATTTCTAATCTGAACATATATAACATGATGTAATAATTCACGTGCCATAAATCAAGATGGGTGAAGCCCCTTACTGTAAACTAGCAAAGAGCTAATACTATGTGGTAGTAATGACGTGTTCGCTGTAGATAAGAGTAGGCTAGCTGAGCCCAACCTTTCAGTATGGCCGTTGATAGGCGTCTGTCGCTGTAACTGGGTTTCTGGTTCTTTTGACAGAATTGTGacacatttttttatgttttgtttttgttgttgtttgttgcttCTTCATTGGAATCTTCTGCTGCCTTTCCCATATTATGTATGAGTTTGTTGAGCCAGTGTGTGTCTCACGCAAGCCCATGTAAAGACAAAACTCGTACTCTTTCTTCTGCCAAAGCAATTCACGAATGAAGGTGTCAGTTGGAGGATTGTGTCATTATATGTTATTGTGGGTGGTGGGTCCCGTGTTTACATTTTGGTATCCAGAGTGGTCCTCTTTTGCACGTTGATGAGAAAACTATGCTTCAGAAGTCTCCATGGGGTCTTGTTGAACAGGAGTAGGCCTAGCTAAAAGGCTGAGGTAGAGTCAGATCCATTTAAACACTACTACCATTCCGGATCAAAAATATCCTGCGGTCGGTCCGTGTTGTTGATCTATATGGAGAAATGTAATAAGAGCGAGACTAACAATAGCCTACCCTCATGAGTCTTGCGGTTGTCAGGTGTCGTTGGCACATAGAGTATATGGATCTTCTATGTTACACATATTGATACATGTAAGGAATCCAGACTGATATGCGTTTGAAGCAAAGGTGTTTCTATTCTTCGTTTTACTCGTAATTGCTCTTGATGACCTTAATGTAACCCCCCCTTATCCTCACCCCCTAGTGGATGGTGGTAGCCTCTTCTCTCCTAAATGATCATCTATGTACAAAGATTGTTCTATGATACATGTTATTGTATATGTTGTACAAGTCAATAAGTGTACACGTAACACTGACAAGTCCTCTCGTAACTGATCTATTGTGACATGACAATACCATCATTTATTTTTCTGTTTTCAAAGGTTATGTTTGTATTTTTAAATGATATACGAAAGTCTAAATGATTGTTATGACCACAACAgtcactcactctccctcaccGACGCTCACATATCCACCCTGCCTTGAACCACAGAAAGGTGGTTACCATAACCATACAGGCAACCATTCTCTCACACAACATATGTTACACAAcacagctgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtaaaaaCCTGCATTATCACTATTCATTTCACTCTGCTCCTTCTCAGGCTAGTGAGACATTCCTAAAGGACAGACAGTCTACTGTACTGGGAGCCAGTCAGCCCCAGACCCTAGAAAGAGTTGGATTTGATTGCCTGGCTGCTTTCCAGGCCAATATGAAGGCCATTGTCCATAACTGATTGTGGTGGTCTAATGAAGAGGGAACAGATCTATTTCCCTATGTGTACTATACCGTCTCTGAGGTTTGTGTTGAGTTAGTACCGGTGCAGTTAACTTCAATGGCTGAGAAAAAGGGTGTTTTGTTTGTATGTTTATTTTGATTTTATATCAACTGTACAACAACGCTGGCTGGGAgtaaagaaaaacacaaaaacatagaaaaatagGATATTCTTAGGATATTCTTTCTCTGTAGATGTCTGTTAAATGAATCATGGTACTGTACCTGGTTATTCTGGCTGTGTCTAGTCACTGGAACTCTTGTCCACACTGTTGTTTCCTGGCCAAGCCAACCGTTTCTCTGGTTGTTTTCTCAATGATGGCAGCAAAGTTTGTCTTGTTTAAATGGATTCTACCACCTTTTGTTCTTATTGATATTATAGTAGTGTAATAGAGATTACTGAAAAAAGAACTGAAAATATGTTGATGCAAATCGAAAATTCAAATAAACATTGATTGATGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2037883 lncRNA downstream 38484 14118439 ~ 14118710 (-) True G1779818
TU2037872 lncRNA downstream 48576 14107240 ~ 14108618 (-) True G1779807
TU2037864 lncRNA downstream 74292 14082635 ~ 14082902 (-) True G1779799
TU2037863 lncRNA downstream 77244 14079504 ~ 14079950 (-) True G1779798
TU2037752 lncRNA downstream 218614 13938147 ~ 13938580 (-) True G1779688
TU2038085 lncRNA upstream 26979 14419206 ~ 14419417 (-) True G1779995
TU2038086 lncRNA upstream 29270 14421497 ~ 14421878 (-) True G1779996
TU2038087 lncRNA upstream 30395 14422622 ~ 14422858 (-) True G1779997
TU2038145 lncRNA upstream 138825 14531052 ~ 14532048 (-) True G1780050
TU2038347 lncRNA upstream 505680 14897907 ~ 14898135 (-) True G1780242
XM_036958784.1 mRNA downstream 483 14132159 ~ 14156711 (-) True poglut2
XM_036958783.1 mRNA downstream 490 14132159 ~ 14156704 (-) False poglut2
XM_021579000.2 mRNA downstream 25590 14127591 ~ 14131604 (-) True tex30
XM_021578999.2 mRNA downstream 29736 14120807 ~ 14127458 (-) True nepro
XR_002470293.2 mRNA downstream 313865 13838464 ~ 13843329 (-) True LOC110502113
XM_036958795.1 mRNA upstream 51301 14443528 ~ 14489125 (-) True gtf2e1
XM_021579011.2 mRNA upstream 172964 14565191 ~ 14570768 (-) True LOC110501444
XM_021579010.2 mRNA upstream 190921 14583148 ~ 14588361 (-) True sp9
XM_021579022.2 mRNA upstream 343081 14735308 ~ 14738738 (-) True LOC110501449
XM_036958811.1 mRNA upstream 351544 14743771 ~ 14783650 (-) False LOC110501448
TU2036210 other downstream 826699 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 984215 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 1175276 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 1293629 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2664895 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2664895 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3477302 17869529 ~ 17903951 (-) False G1783895

Expression Profile