RNA id: TCONS_00051294


Basic Information

Item Value
RNA id TCONS_00051294
length 3222
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_026304
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22158024 ~ 22216771 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAGAGGTGTGGGCGAGGAACGCATGCGATGCTTCACGTGCACGCGGTTTGCCGGTGTGGAAAAACCTAGAAGTGTGGAGCATAATGTGGCTCACGCCGGTGTGTTAAGTCAGTCTGTATGAAAGGTGTCATTTTTAAACAAAGGTAGCCTATATTGCAGGTATAACatattaaaaatctatatttttgttttgctgtCTTTTGCTCTAAAGCCTAATCGGTCTAAAAGCGGTAAGCGGACGTGTCACTGGTCCTCCGGTGTAAAGGGATTTTCGTAGTTTGCTCTCCTCTGAAAATGGTGCTGATGTTGCATGTGAATGTTTGTCATGGTTACACAAATCGCCACTGAATCTGCAAGGTTGCTCTTTATATGTGCATTTAGCCTACTAAACTGAGTTTACAGCACGTCTTTTTGAGAGATTCCCCGTTTCTTTCCTCCCCGTGAGCGTGGTTTATCGAACATGACCTTTGTAACACCACATGGTGCTTTTGTCTGGGCGATTTCGCAAGTACAGTCTTAATGAAGGAggacaaatatttttataaatgtgctaATACATACACTTAAAATAAGACTTCACATTTCCAAAtgaaaaacagaaacaactaATTTAATGCGCTTTCTCATGCAGTATTTCATCTCTTCAGTTTATGTAGCACCATTAAACTACATAAAGGCTATTTCTCCCTTTTCACTATTTTAAATGAGAATGTATAGACTTAATTCTGCATTTTCGAGGCAGCGGACACACCTTGCTCCCCCGCCCtccccgtctctctctctctcttcctcacacacagacacacagcatcacGGCTGGCTGTTGCTCGGCCACGCGCTCATCATCCGCGCCCATTGTTCGCTTCACTGAAATCATCTCAAAATGGACCATCAGGACCACATGAATTCTGGACAGGTGGGTGACTCTCCCGGCAACAACATAGCATCTGGTGTAGTCAACATGTCCATCAATGACGGCCATCAACAAGACCTGAAGAACGGGACAGCGGGATATATGGGAGCAGAGGAGACACATGAACCAACACCTGAAGTGACTGCCCACAAGGCTGCTTTAGAAGACTCCGATCCCAAGCCGTCCTTTGATAAAGATGAGCAATTGGAAGCCTTAACACCCGGAAGTCCGCCAAAGAGTGGCCGGAGCAGTGCGGCATCAGTGGATGGGGAGGGAGAGCGGGAGAATGGGGAAAGGGAGAGCTCTGTGAGCCCACGGGAGTCTCCAGTGTCGCCACATCCACTCCCGGTAACCCTTGCTGATGGCCTGAGCTCAGGGATCACAGGCTTTGACAGCCAGATGAAGAGAAGTCCTTCGGATAAGATGTCCGACCATCATAGTCCCAGTGGATCTGAAGAGGAGGAACATGAAATGGAGAAATCTGAAAGAAGATTTTCTGGTTCACCTGGATTTGGAGCAGATCCTAGAAGCACTATCAACTTGAAAGAGAATGAAAATGAGGACAAAGAAGTGAGTGAAGTCAGTGATGAAGAAGAGGAACAAACGGGAGTTTCCTTAGTGAGCAGTTCTATCACCCCAGACTTGACAACCCAGAAAGAGGATGAACATGAAACCCCTATTCACCTTCCCATGACCCCAGAAGAAGCTAAGAAACGCGGCCTGTCGTTCGACTACACAGAACCTCAGGATCCTGGTCATCCGCATGGTCCTGTGGGCTGGGAGTGCAGCTCTGATAAAACACCACCGGAAAGCAAGAGCCCAGACTCCTGCAGGGCAGATCCGGGATCACCTCTTACACCCAGTGCTGCCGCTGACCAGACCCAAGAGGAATCATCTCTAAGGGACTTTCAGACAGATACGcaagaggaagaagaggaaaTAGAGGTACCAGAACAAGAAGAGGAAGAGACCCCAGTTCCTCCATTTTCCCGAGAAGTTGCTACACCAAAGATGGAGCTTAAGGCAGAGGAACATCTAGATTCTAATAAAACAAAGGAGGTCAGTCAGGAGAAATACCTGGAGACGAGTGATGATGACGAAGTAGAAACTGAAAAGGTTAAATCTGTTGCCACACCAGAACCTGTTGTCATACCAGAAAATGCTGCCATACCAGAACCTGTTGCCATACTAGAACCTGTTGTCACTAAAGCTAAAGATGCTGTTAAGCCCAGTGCCGAAGTCCCGCCAACAAAACCACCAAGCAAAGCAGCTCTTGTCAAAGAAGCTCCAGCCAAAAAAACGAAAAAACCCGTAGCTACAGTTTCTGCCACTCCTTCCCCCAAAACTGCTCCTAGCCTTCAGAAAACTCCCTCTAAAGATGCTGCTCCGGCCAGAAAAGCAAGTGTCCCATCCAAAGCCAAGGCTGGAGCAGGGGCAACTCCTGAAAAAAAGACACCCACCACCACACCGCATGCAAAAGCTAGACTCACCCAAAGAGGGTCTTCAGTCACAGGCATCCCCAGAATAAAGCCCTCAGTCACTCCTTCAGCTCCATCATGTCCCTTTAGCACTCCAGCCTGCACAAACTCTGTAAAAAGCCCAGGAACAAGAGAGTCCAGGTTCACAGCTGGAGATGCAAAGACAAAGACAGCGGGTGCTAAACCCCAAGGAGTTGGTGCCAAAATCCCTGCTGCTTCACGGATGGAGCAGCGAAGGACAGGACCAGGGTCCATTgaaagagCCGACTCACCTAAAACCCCAGACCGCAGTGGTTGCAGCAGCCCCGCCAGTCGGTCCTCCACTCCCGGGCAACAGGTGAAGAAGGTAGCGGTTGTACGCACCCCACCCAAATCACCTGGCTCGCTGAGATCCCGCGCTCAGATTGCTCCTGTGGCACCCATGCCTGACTTGAAGAACGTCAAGTCCAAGATCGGCTCCACTGAGAACCTCAAACACCAACCTGGAGGCGGGAAGATTCAGATTGTGCACAAAAAGATCGACCTAAGCAACGTCCAGTCAAAGTGCGGCTCCAAGGCCAACATTCATCACAAACCGGGGGGTGGAAATGTCGAGATCAAATCTGAGAAGTTGGATTTCAAAGCCCAGTCAAAGGTTGGATCTCTGGAAAACATTGGACATGTCCCTGGGGGTGGACAGAGGAGGAGGGAGAAGGAGAAGGAAGCAGAGCCGCAGGCCGCAAATGCTTCCTATAATGGGGATGCTGTTCACTCTAATGAAGTGGACATGACCTTTGACCTTCACGACTCTGAAGGCAACAGTCTGGTTAAGTCAAAGGCCCTCAATTGA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081027-2 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization and neuron projection development. Predicted to act upstream of or within central nervous system neuron development and microtubule bundle formation. Predicted to be located in cytoplasm and microtubule. Predicted to be active in neuron projection. Is expressed in nervous system; shield; spinal cord neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in dementia (multiple); neurodegenerative disease (multiple); progressive supranuclear palsy; and temporal lobe epilepsy. Orthologous to human MAPT (microtubule associated protein tau).

Ensembl:

ensembl_id ENSDART00000187105

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052999 lncRNA downstream 6483 22152607 ~ 22155523 (-) True XLOC_026303
TCONS_00051278 lncRNA downstream 955060 21201428 ~ 21206946 (-) True XLOC_026295
TCONS_00051269 lncRNA downstream 1099247 21056731 ~ 21062759 (-) True XLOC_026290
TCONS_00052998 lncRNA downstream 1246296 20901066 ~ 20915710 (-) True XLOC_026285
TCONS_00052997 lncRNA downstream 1760282 20130274 ~ 20401724 (-) True XLOC_026283
TCONS_00053000 lncRNA upstream 195232 22408790 ~ 22421923 (-) True XLOC_026308
TCONS_00053001 lncRNA upstream 825950 23039508 ~ 23042675 (-) False XLOC_026310
TCONS_00053002 lncRNA upstream 825950 23039508 ~ 23045222 (-) False XLOC_026310
TCONS_00053003 lncRNA upstream 825950 23039508 ~ 23069636 (-) True XLOC_026310
TCONS_00053004 lncRNA upstream 1006712 23220270 ~ 23224044 (-) False XLOC_026311
TCONS_00051288 mRNA downstream 161020 21999006 ~ 22000986 (-) True XLOC_026302
TCONS_00051286 mRNA downstream 759727 21385251 ~ 21402279 (-) True XLOC_026300
TCONS_00051285 mRNA downstream 764702 21385251 ~ 21397304 (-) False XLOC_026300
TCONS_00051284 mRNA downstream 779515 21350509 ~ 21382491 (-) True XLOC_026299
TCONS_00051282 mRNA downstream 873804 21282477 ~ 21288202 (-) True XLOC_026298
TCONS_00051301 mRNA upstream 8686 22222244 ~ 22242868 (-) False XLOC_026305
TCONS_00051300 mRNA upstream 8686 22222244 ~ 22242868 (-) False XLOC_026305
TCONS_00051299 mRNA upstream 8686 22222244 ~ 22242868 (-) False XLOC_026305
TCONS_00051302 mRNA upstream 9682 22223240 ~ 22228602 (-) True XLOC_026305
TCONS_00051303 mRNA upstream 127485 22341043 ~ 22359119 (-) False XLOC_026306
TCONS_00051287 other downstream 544966 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051260 other downstream 1163646 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051258 other downstream 1179300 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051254 other downstream 1368350 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051249 other downstream 2055773 20104059 ~ 20106233 (-) True XLOC_026281
TCONS_00051313 other upstream 1168934 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051315 other upstream 1216687 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051337 other upstream 1604364 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051343 other upstream 2189591 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051348 other upstream 2532208 24745766 ~ 24745881 (-) True XLOC_026332