RNA id: XM_036958812.1


Basic Information

Item Value
RNA id XM_036958812.1
length 1472
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110501448
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14743771 ~ 14793451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTTCGGTAGCCCGGGTCAAGGAAGTTGGGTAACTCTAGAATTCACCGTATGGGGAAATCATAGACGTCACGCTCGGGTTCCGAAAGTGGGGTCTTTACAGTACTATATTTGGTTATATGTTTACCTACAGAAGTTACGCTACACCTTGGATCTGTCAGACTGTGATTGCCAGTTTTATTTGTTGGAAAAGTCAAAGacagacagacgtcgAGTTGGGTCCGAGTGTCATTATGAGATGTCGTCTCTCAGCGCCTCCTTCGTGCAAATCAGGTTTGATGACATCCACTTCTACGAGAACTGCGGCGGCGGCAGCTTCGGGAGCGTGTACCGAGCCAGGTGGATCTCTCAGGACAAAGAGGTGGCGGTGAAAAAGCTACTCAAGATCGAAAATGAGGCTGAAATCCTCAGTGTGCTCAGCCATCGCAACATCATTCAGTTCTATGGGGCGATCCTTGAAGCACCCAACTATGGAATCGTCACCGAATATGCTGGTGGAGGGTCCCTGTATGACTACCTGTCCAGTGCAGAGAGTGAGGAGATGGACCTGGGACAGGTTATGACTTGGGCCATGGAGATTGCCAAAGGCATGCACTATTTACACTCAGAGGCCCCGGTCAAGGTTATCCACAGGGATCTGAAGTCCAGGAATGTGGTTGTGACGGCAGACAAAGTTCTTAAGATCTGTGATTTTGGGGCATCCCGGTTCCACTCCCACACCACACACATGTCCCTGGTAGGCACGTTCCCCTGGATGGCCCCAGAAGTCATCCAGAGCCTGCCCGTGTCTGAGACCTGTGACACCTACTCCTACGGTGTGGTTCTGTGGGAGATGCTCACCCGGGAGATTCCCTTTAAAGGCCTGGAGGGATTACAAGTCGCCTGGCTGGTGGTGGAGAAGAGTGAGagATTAACCATTCCCAGTAGCTGCCCAACTAGTTTCGCTGAGCTGATGAGGAAGTGCTGGGTGACTGAGCCAAAGGAAAGACCCATGTTCAAACATATCCTTACAACCCTGGAGTCCATGTCCAATGACAGCAAGCTTCCTGAACAGTGCAACTCCTTCTTACACAACAAGGCTGAATGGAGctgtgaGATTGAGGCCACACTGGAGAGACTGAAGAAGTTGGAGCGGGATCTGAGCAGCAAAGAGCAGGAACTGAAGGAGAGAGAACGTCGCCTGAAGATGTGGGAGCGCAAGCTCATTGAGCAGTCCAACACCCCGCTCCTTTCCAACCTTCATATTCATTCCTGGACAGAGGAACATGTGGGGAGGGGGCAAGTGGCATGCAGCTGTATGGTGACCTGTTTAAGGAGAACCACATTACAGGCaagaggctgctgctgctcacgGAAACGGACATGCGAGACCTGGGGGTCAAGTCCAAAGGTCACATCATGCACCTCAAGAGGGAAATTGAGAAGCTAACCAATGATTACACGGTGCTCTTCCACTTCCCTCCACTAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038145 lncRNA downstream 211723 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 320913 14422622 ~ 14422858 (-) True G1779997
TU2038086 lncRNA downstream 321893 14421497 ~ 14421878 (-) True G1779996
TU2038085 lncRNA downstream 324354 14419206 ~ 14419417 (-) True G1779995
TU2037980 lncRNA downstream 492550 14250704 ~ 14251221 (-) True G1779894
TU2038347 lncRNA upstream 104456 14897907 ~ 14898135 (-) True G1780242
TU2038348 lncRNA upstream 107883 14901334 ~ 14901540 (-) True G1780243
TU2038371 lncRNA upstream 146403 14939854 ~ 14940056 (-) True G1780264
TU2039003 lncRNA upstream 222704 15016155 ~ 15021609 (-) False LOC110501455
TU2039001 lncRNA upstream 244547 15037998 ~ 15043656 (-) False LOC110501455
XM_021579022.2 mRNA downstream 5033 14735308 ~ 14738738 (-) True LOC110501449
XM_021579010.2 mRNA downstream 155410 14583148 ~ 14588361 (-) True sp9
XM_021579011.2 mRNA downstream 173003 14565191 ~ 14570768 (-) True LOC110501444
XM_036958795.1 mRNA downstream 254646 14443528 ~ 14489125 (-) True gtf2e1
XM_036958794.1 mRNA downstream 351544 14157194 ~ 14392227 (-) True stxbp5l
XM_036958808.1 mRNA upstream 283 14793734 ~ 14826778 (-) False rapgef4a
XM_036958809.1 mRNA upstream 283 14793734 ~ 14833281 (-) False rapgef4a
XM_036958807.1 mRNA upstream 283 14793734 ~ 14841275 (-) False rapgef4a
XM_036958806.1 mRNA upstream 283 14793734 ~ 14841276 (-) True rapgef4a
XR_005039048.1 mRNA upstream 28995 14822446 ~ 14822500 (-) True LOC118943730
TU2036210 other downstream 1413276 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1570792 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 774052 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 892405 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2263671 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2263671 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3076078 17869529 ~ 17903951 (-) False G1783895

Expression Profile