RNA id: XM_021579020.2


Basic Information

Item Value
RNA id XM_021579020.2
length 3209
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110501448
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14743771 ~ 14793451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGTGCCACTCCGGGCAGGCATAGCCAATGGCACAGAGGCTTCCCTGGGGTACTGTTAGCAGCACATCCAGTCACACACTCTCTAATGATGTGCTCTAGTGTACAGCTGTTCTTTTAGTGTGCCACCGGCGCAGGACTTTTACTTGAGGAATCAGAGGGGTCTTTTTTTGGGGAACAAACCTGAGACATATTTGAGCGTTGGTTCTAAAAGAAAAAAACAGTTTTAGTGAACTgtgcctcttcttcttcctcctccactgtctccttccctgtggtcctccagacagacagacgtcgAGTTGGGTCCGAGTGTCATTATGAGATGTCGTCTCTCAGCGCCTCCTTCGTGCAAATCAGGTTTGATGACATCCACTTCTACGAGAACTGCGGCGGCGGCAGCTTCGGGAGCGTGTACCGAGCCAGGTGGATCTCTCAGGACAAAGAGGTGGCGGTGAAAAAGCTACTCAAGATCGAAAATGAGGCTGAAATCCTCAGTGTGCTCAGCCATCGCAACATCATTCAGTTCTATGGGGCGATCCTTGAAGCACCCAACTATGGAATCGTCACCGAATATGCTGGTGGAGGGTCCCTGTATGACTACCTGTCCAGTGCAGAGAGTGAGGAGATGGACCTGGGACAGGTTATGACTTGGGCCATGGAGATTGCCAAAGGCATGCACTATTTACACTCAGAGGCCCCGGTCAAGGTTATCCACAGGGATCTGAAGTCCAGGAATGTGGTTGTGACGGCAGACAAAGTTCTTAAGATCTGTGATTTTGGGGCATCCCGGTTCCACTCCCACACCACACACATGTCCCTGGTAGGCACGTTCCCCTGGATGGCCCCAGAAGTCATCCAGAGCCTGCCCGTGTCTGAGACCTGTGACACCTACTCCTACGGTGTGGTTCTGTGGGAGATGCTCACCCGGGAGATTCCCTTTAAAGGCCTGGAGGGATTACAAGTCGCCTGGCTGGTGGTGGAGAAGAGTGAGagATTAACCATTCCCAGTAGCTGCCCAACTAGTTTCGCTGAGCTGATGAGGAAGTGCTGGGTGACTGAGCCAAAGGAAAGACCCATGTTCAAACATATCCTTACAACCCTGGAGTCCATGTCCAATGACAGCAAGCTTCCTGAACAGTGCAACTCCTTCTTACACAACAAGGCTGAATGGAGctgtgaGATTGAGGCCACACTGGAGAGACTGAAGAAGTTGGAGCGGGATCTGAGCAGCAAAGAGCAGGAACTGAAGGAGAGAGAACGTCGCCTGAAGATGTGGGAGCGCAAGCTCATTGAGCAGTCCAACACCCCGCTGTTCCTACCCGTGGCGGCTCAGATTAGCGCTGAGTCGTTCTATGAGTCTAAGACGGAGGAGTCGAACAGTTCGGAGATGACGTGTCAGATCACATCCTCCAGTAAcggggaggtggaggggatgaGACTGCAGGCCATGATGAAGGGCTTTGGGGACATGTTTGCCTTGGACATGGGGGGCCCCGTCCTGCACTCTGGCATGCAGGTCAACATGCAGGCCAAGCAGAACTCTTCCAAGTCCAGCAGTGTCAGAGAGGGCCGCAAAATCCACACGGCCTTGGGGATGTCAGACTTCAACTGGTCAGACGACAGTGATTAGAGCGAACTGATTGGTCCAGCTATGTATGGGCCACTCAGTAGCGTCTGTCAATCAATCCTTTTGACCTGTGTCAAAACTGTGATCTTGCGGCAAGCTCCCATGCATATTCCTTCTCACGTCACTGGTGTTAGGGACACAAGCCACATTAGATAATTCATTACTAATAGTTTTTGTAGCGATCCATTTTATTTTGCATACATACTTTTTTTAAACGCTGTATGAACATAATGTATTAGAAGCCTTTCGCCTACATGGCCCTTACGGGTGTCATTTATGCCTAATGTACTGGATGTATAGTGCCATGCTGTGAAGAAAGAGCCATGTGAGCAAGTTGCAAGGAGGAGGCAAAGCTTTTATGATGGAAGTGACATTTTGCTGACATTAAGAGTGGCCAATTTTGTTCTGTATGTGGTGGAGCGTAGTTGCTGTGATTAAGTGTCTCACCAGGATGAGAAAGAACATGTTTCCCTCAGCTGACCCAGACTGGTgtcagcaggagagagagagagagagagagagagagcgagagagaggaagtttCCTGATAGCACTGTTCAACTACGGACTTCCCTGTTCCTTTTTTCTCTATACACTGTCAGGAATCTTTGGATTTTAGGCCCACATACTATGGCTTAGTGGTGTAAAGTGCACTGTAGGTGTCTGTGTCTATCTATGTGGGGCCCCAGTAAAGTCTTGGTTCATGTGCTGGTTGAAAGAAGCACGTTACAGATGCATATCATCAAGATGTTTATGAGGTGTGTCGTAGACCTTAGACTTCCACACCTTGACAGGACTAAGTTCTCACAGACAAGGGCAACTGTATACGACCTTCAGTCACTTAATTCAGTGGCAAAAGCCCTGCCGTGTGCTGGAATCATTTCGTTAAATCAAATGATatgtgaagtaaaaaaaaaaaagaatcagtATTTCATTGGAGAGAGGATGTGAAATACTGTTTTTAGAGGGCTTCTCTAAGCTAAAGGTGATCTACCAGCTCAATATGTTTGCATCTGCACCAACAGTTTTGACCACAGGCCAACGTGTGTTTAACAACCCCCAAAGCGAGCCTATTAAAGCTCACTAAATGTGTCATCACTAAATGCCCTGTAAATTATGCTAGGAGCTCTTCTCTTCTAAACATAGCCAATATGAAGGATCTTTCTGTTTGACTCCCAACAGCTTGGACCTAGGCCCTGCAGCTTGGACTTCTTTCTACTTAGTTGATGTATGTTTTTTATATACTGTTGTGTAATTATTAAACCTAGACTGAAACATCATCCATTAACAGGCTATAACCAACCGATACACTACCTTGTGTGAAAGTCAACCACTTTGTAAGGTATTTTCTAGACATCTAATGCCCAGAGTTGCAATATGATCTATGCAAACTACATCACCTTGGATTAGTCAAATTCCTTGGATTAGTCGAATAGTGTCTCTTTAATGGCGTGCCATAACTCTATCAGACCGACCACTTTTTTGACGTGAACCTATTTTGCTGCAGAATTTCTCTACTGTTCCTTGTTTCTCAATAAACATTTTCTCATTAAACATTGAACTTCCTGCTTTGGTTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038145 lncRNA downstream 213990 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 323180 14422622 ~ 14422858 (-) True G1779997
TU2038086 lncRNA downstream 324160 14421497 ~ 14421878 (-) True G1779996
TU2038085 lncRNA downstream 326621 14419206 ~ 14419417 (-) True G1779995
TU2037980 lncRNA downstream 494817 14250704 ~ 14251221 (-) True G1779894
TU2038347 lncRNA upstream 114258 14897907 ~ 14898135 (-) True G1780242
TU2038348 lncRNA upstream 117685 14901334 ~ 14901540 (-) True G1780243
TU2038371 lncRNA upstream 156205 14939854 ~ 14940056 (-) True G1780264
TU2039003 lncRNA upstream 232506 15016155 ~ 15021609 (-) False LOC110501455
TU2039001 lncRNA upstream 254349 15037998 ~ 15043656 (-) False LOC110501455
XM_021579022.2 mRNA downstream 7300 14735308 ~ 14738738 (-) True LOC110501449
XM_021579010.2 mRNA downstream 157677 14583148 ~ 14588361 (-) True sp9
XM_021579011.2 mRNA downstream 175270 14565191 ~ 14570768 (-) True LOC110501444
XM_036958795.1 mRNA downstream 256913 14443528 ~ 14489125 (-) True gtf2e1
XM_036958794.1 mRNA downstream 353811 14157194 ~ 14392227 (-) True stxbp5l
XM_036958808.1 mRNA upstream 10085 14793734 ~ 14826778 (-) False rapgef4a
XM_036958809.1 mRNA upstream 10085 14793734 ~ 14833281 (-) False rapgef4a
XM_036958807.1 mRNA upstream 10085 14793734 ~ 14841275 (-) False rapgef4a
XM_036958806.1 mRNA upstream 10085 14793734 ~ 14841276 (-) True rapgef4a
XR_005039048.1 mRNA upstream 38797 14822446 ~ 14822500 (-) True LOC118943730
TU2036210 other downstream 1415543 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1573059 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 783854 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 902207 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2273473 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2273473 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3085880 17869529 ~ 17903951 (-) False G1783895

Expression Profile