RNA id: XM_036958807.1


Basic Information

Item Value
RNA id XM_036958807.1
length 4008
RNA type mRNA
GC content 0.49
exon number 30
gene id rapgef4a
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14793734 ~ 14841276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATCATTAACGTTCCACTCAAGTAACGTATTGCGTGAAAAGGGATCACAAAAAGGCGTCAAATTCAACGATGCATTTGAAGAGCAGGAGGAATAAGGGAATAGACCAATAAAAAGAGCTGCTGATGCAAGTCTTCCTTTCACCGGGTCTATGATCTCTCCGAAAATGGTAGCAGCGCACACCTCTGGCCATTCCTCTGCCTCTGCAGATTGGATTATTTGCTTTGATAAAAGACCTGCTGAACGCTCTGGGGAAGATGTGGACATCATCCTGGCCAGGCTGAAATGTGTGAAGGCCTTTGAGCGGTTCCACCCTAGCCTTCTACAGCAGATATGCCTGTGTGGATTCTACGAATGTCTAGAGAAGGGTATCACATTATACCGTCAAGGAGATATTGGTACCAGCTGGTATGCTGTCATCTCTGGCTCACTTGATGTCAAAGTGTCAGAGACAGCAAATCATCAGGATGCTGTCACAATCTGCACTCTGGGTATTGGGACAGCATTTGGGGAGTCGATCCTGGATAACACCCCTCGGCACGCCACCATTGTCACCCGGGAATTCAGTGAACTCCTCCGCATCGACCAGAGGGAGTTCAAGTCTCTGTGGGAGAAATATCGTCAGTGCATGGCTGGACTGCTTGCCCCACCCTATGGAGTTATGGAAAGTGGTGGACGTAGCACTGACAGAATGTCTGACAAAGAGAACATAAGCAACAACTCTTTTGGATCCATCTCTAAACATCTGAATAAGGTCCCATCTGAGAAGATCTTGCGAGCAGGGAAGGTTCTCCGTGATGCCATCCTCTCCAGAGCTCCCCACATGATCCGAGACAGGAAGTACCACCTGAAGACATACAGGCAATGCTGTGTGGGAACAGagctggttgactggcagatgcAGCAGAGCTCCTCTGTTTACTCTCGCATTCAAGCAGTGGGCATGTGGCAGGTGCTGTTAGAGGAAGGTGTTCTCAACCACGTGGACCAGGAGCTGACCTTCCAGGACAAGTATCTTTTCTACCGTTTCCTGGAGGATGAACAGGAAGACGCTCCCCTGCCCACCGAGGAGGAGACCAGGGAGAGCGATGAGGAGCTGCAggacaccctcctcctcctctcccaggtcGGCCCTGACGCCCACATGCGCATGGTCCTGAGGAAACATCCAGGACAGAGGGCAGCCGATGATTTGGAGATCATTTATGAGGAGCTGCTTCATATAAAGGCCTTATCGCACCTATCCACCACTGTAAAGAAAGAACTAGCCGGCGTCCTGATCTTTGAGTCCCATGCCAAAGCAGGAACAGTCTTGTTCAATCAAGGGGAGGAAGGCACATCGTGGTACATCATTCTAAAGGGCTCTGTAAACGTTGTCATTTATGGAAAGGGGGTTGTTTGCACGCTGCATGAGGGAGACGACTTTGGGAAGCTTGCTCTGGTCAACGATGCCCCCCGTGCCGCCTCCATTGTTCTACGAGAGGATAACTGCCACTTCCTACGTGTGGACAAGGAGGACTTCAACCGGATCCTCAGAgacgTGGAGGCCAACACGGTGCGTCTGAAGGAACATGATCAGGATGTTCTTGTCCTGGAGAAGAGCCCCAGCAGCATCCAGACCTCTAcccacagcaccaccaccaccccctcccaCTACAAATACACTGTGATGTCAGGGGCACCAGAGAAGATTCTGGAGCACTTCCTGGAAATGATGCGACTGGACTCTCACCTCAACGAATCAGACCCAGCTCTGGACGACTTTGTGCTCATGCACTGCGTCTTCATCCCTAACAGCCAGTTGTGCCCGGTGCTCATGGCCCACTACCACGCTGAGGCGTCCCAGGGCTCAGAACAGGAGCGTCTGGACTACACTTTGAACAACAAGAGGagggtgatcaggctggtgctcCAGTGGGCCTCAGTACATGGAGATCACCTTCAGGAGGAGGATGCCTCACTAGCCTTCCTAGAGGAGTTCTTTGTGTCTGTATCTGAGGATGCCAGTGTGATTCCTGCTCTGAAAGATCAACTCCCAGAGTTAGAGAAGCTAGTTAAAAACAGCTCTGACGATGCCAGATCCTCTCCACAAAAGCACAAAGTCCTGTTGCGGCAGTTCAGCATGGGGGATGAGAAGCTGCAGAAACGACAGGCCATCAAGAGTAATGATGAGATCCTGTTCAAAGTGTACTGCAGCGACCACACCTACACCACCATCCGGGTCACCGTGGCCGCCTCAGTCAGAGAGGTCATCAGCGCAGTGGCCGACAAGCTGGGGTCAGCGGAGGACCTCCTCCTGGTCAACCTCAGTTCGGCCGGAGATAAAGTGGTGCTGAAGCCCAACGATATTTCAGTCTTCTCTACACTCAGCATCAACGGCCGTCTGTTTGTCTGCCCCAGGGATCAACTGGATTCATTGACACCCTTGCCAGAGCAGGAAGGGCCCTCCACTGGCTCCATGGGCAGCTTTGAGTTAATGAGCTCGAAAGACCTGGCCTACCAGATGACTGTCTACGACTGGGAACTCTTCCACTGTGTACACGAGCATGAGCTGATCTACCATACGTTTGGGAGGCAGAACTTCAAGAAGACCACAGCCAACATGGACCTGTTCCTCAGGAGGTTCAATGAGATCCAGCTGTGGGTGATCACAGAGATCTGTCTGTGTGCTCAGCTCAGCAAGCGCGTTCAGATGCTCAAGAAGTTCATCAAGATCGCTGCCCACTGTAAGGAGTATAAGAACCTCAACTCCTTCTTCGCTATCATCATGGGCATGAGCAACCCAGCCGTGAGCAGACTGAGTCAGACCTGGGAGAAACTACCCAGCAAATTCAAGAAATTTTACAATGAATTTGAAAGCTTAATGGACCCGTCCAGGAACCATCGGGCGTACCGGctcactgtggccaagctggaCCCACCCATCATTCCCTTCATGCCGCTGCTGATCAAAGACATGACATTCACTCATGATGGAAACAAGACGTTCATTGACAGTTTGGTCAATTTTGAGAAAATGcgAATGATCGCTAATACAGTGAGGATTGTGAGATACTGCAGAAGTCTACCATTCGGTGCAGAGCCGTCGCAGACCAGTAAGAACCACCCGGACGTGCGGAGCTACGTGCGCCAGCTGACTGTTATTGACAACCAGAGAACACTGTCTCAGCTCTCCCATAGACTGGAGCCTCGCAGAACCTGAATTCTCCCTGGACACTGGACAGACACATGTCACATGCGGCTGCTCTACTGCCAAAAAGAAGTTTGctttatacagtatgttataccagtacacacacatacccactctGCTACATGGAACGTCACATTATTACATGTATAGTCAAGTATCATTTTAGATGCTACAGAGTTCATCAGCTCCACCTTCAACTGTATTTCAAATGTCAGTATCATCTATGCTTCTTTGTTTCCTTAAGTGTATTGTTTACATTATTTGTTGTAAACAACGGGCAGGCAGCCTGGTTTAAGTTTCACAGCATATTCAAATTCATCTCATTCTTATGTCCCTGAAGGTCTATTTGATACTTTGAAGTCACCTGCCCCATGAAAAGGACACAATGTATAAAGCAAAGGATCTTTTGGAAATAGTCATCCATTAGATTGTTGCACAAATCTATGTTGGGTTGATGTTAGTTAGGAAACGTTTTCCGAATGGAAACATTGGCTCTTATTTCACTCCCTGACCTCATCAATTGCAAATCCTGATATTCAGTTGTGGTTTCATATCTTTTTTTTGTAAATCAGattatatttatacatattttaGTTTGTGGCTTTTTATTACACCTTGTACAATGTATTCCTCTATTTATTATGACCTCAGCATGCAATGATTTGAGATGTTGGGCTGGATATATGTGAGCACATTCCTCTATAACAATCTGTGAGGTAACTATTGTCAGCAagatttttttcccccatgtTTATTCTGTAAATATTAAAAACGGATTAGATGTATCTGCTGAAGATGCTGTCCATTTGATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038145 lncRNA downstream 261686 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 370876 14422622 ~ 14422858 (-) True G1779997
TU2038086 lncRNA downstream 371856 14421497 ~ 14421878 (-) True G1779996
TU2038085 lncRNA downstream 374317 14419206 ~ 14419417 (-) True G1779995
TU2037980 lncRNA downstream 542513 14250704 ~ 14251221 (-) True G1779894
TU2038347 lncRNA upstream 56632 14897907 ~ 14898135 (-) True G1780242
TU2038348 lncRNA upstream 60059 14901334 ~ 14901540 (-) True G1780243
TU2038371 lncRNA upstream 98579 14939854 ~ 14940056 (-) True G1780264
TU2039003 lncRNA upstream 174880 15016155 ~ 15021609 (-) False LOC110501455
TU2039001 lncRNA upstream 196723 15037998 ~ 15043656 (-) False LOC110501455
XM_036958812.1 mRNA downstream 283 14743771 ~ 14793451 (-) False LOC110501448
XM_021579019.2 mRNA downstream 349 14746038 ~ 14793385 (-) True LOC110501448
XM_036958811.1 mRNA downstream 10084 14743771 ~ 14783650 (-) False LOC110501448
XM_021579020.2 mRNA downstream 10085 14746038 ~ 14783649 (-) False LOC110501448
XM_021579022.2 mRNA downstream 54996 14735308 ~ 14738738 (-) True LOC110501449
XM_036958816.1 mRNA upstream 62369 14903644 ~ 14934324 (-) False LOC110501452
XM_036958817.1 mRNA upstream 62369 14903644 ~ 14934324 (-) False LOC110501452
XM_036958818.1 mRNA upstream 62369 14903644 ~ 14934324 (-) False LOC110501452
XM_036958819.1 mRNA upstream 62369 14903644 ~ 14934324 (-) True LOC110501452
XM_021579030.2 mRNA upstream 134063 14975338 ~ 14980745 (-) True LOC110501454
TU2036210 other downstream 1463239 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1620755 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 726228 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 844581 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2215847 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2215847 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3028254 17869529 ~ 17903951 (-) False G1783895

Expression Profile