RNA id: XM_036958819.1


Basic Information

Item Value
RNA id XM_036958819.1
length 4672
RNA type mRNA
GC content 0.45
exon number 26
gene id LOC110501452
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14903644 ~ 14934324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGGCATTCAGCAGGTCATCGAATTCGGCAGCGAATCCTGAGCGAGGGGTAGTGGAACAACCAGCACAGCATTGAACTATAGTGGTACCCTTAGGTCCTAACGCAATGGTGCACCCGATAATATATTTTCCAATTCATGTGGTACTTATTTGTTTGCTAGAATGGACCCATATATCAGGCTTCAACCTGGATACCTTGAATGTCCTGAGGAAAGACGGAGAACCGGGCAGTTTATTTGGATTCTCTCTAGCCATGCACCGGCAACTTAATCCTTCAGATAAAACAATaCTGTTGATTGGAGCACCAAGAGCCAAAGCACTGGCTAACCAGAGAGCCAACATAACCGGTGGCCTGTACAGTTGTGACATCACCACCGAATCCGATGACTGTCTCCGAATCGATTTTGACAATGAAGAGGATGTGAGAGTTGAGAACAAGGAGAACCAGTGGATGGGGGTGACAGTTAACAGCCAGGGCCCCGGAGGGAAGATTGTGACCTGTGCTCACCGCTATCAGAGACGTCTGTTTGTGGACACTGCTCAGGAGTCCCGTGACATCACAGGTCGCTGCTACATCCTGAGTCAGGACCTCACTATTGATGAATCCTCTGATGAAGATGGAGGGAACTGGAGGTTCTGTGAGGGGAGAGCCAGAGGCCATGAGAGGTTTGGCTCCTGTCAGCAGGGTCTGGCTGCCACTTTCACCAAGGACTACCATTACGTGGTGTTTGGAGCGCCTGGCGCCTACAACTGGAAAGGCATTGTACGTGTAGAGCAAAAGAACAACACTTTGTTGGAAAGGGGATTTTATGACGACGGACCTTATGAAGTTGGAGATGAGAACCGCTTGGATCCTGACCTGGTGCCTGTGCCTGCTAACAGCTACTTAGGGTTTTCCATTGATTCTGGGCATAGCATCACCAAGGGGCGTGGCCTGACCATTGTGTCTGGGGCACCGCGAGCCAATCACTGTGGGGCTGTGGTCCTGTTGAGAAAGGAGAATGAAGCGTCCGCAAGACTCTCCCCGGAGTACATTCTAGAAGGGCCTGGACTGGCATCTTCTTTTGGATATGATGTAGCTGTGGTCGACCTGAATGGAGATGGGTGGCAGGATATTGTTGTGGGAGCCCCTCAGTTCTTCATGAAAGAGGGAGACTTTGGAGGAGCTGTTTATGTCTACATCAACCAGGCAGGAAAGTGGGACAAGATCACCCCAATCCGCCTCAATGGAACCAAAGACTCAATGTTTGGGCTGGCAGTGGAAAACATCGGTGACATCAATCAGGACTCCTATCAAGACATTGCTGTTGGAGCGCCCTACGCTGATGCCGGGGCAGGAAAAGTGTACATTTACCACGGTTCTGCTATTGGAATCAACACCAAGCCGGCACAGATCCTTGAGGGAATGCCCAACAACATCAGATTATTTGGATATTCTCTGGCTGGGAATATGGATTTAGATAAGAATTCCTATCCTGATATAGCTATTGGGTCTCTCTCAGATACAGTTCTCGTTTACAGggCAAGGCCAATTATTAGCATTCAGAAGGATGTCAAAATTACTCCAAAGGAAATTGACCTCACAAAGAAAACCTGTGGCAACAGTATCTGCTTGACCGTGGAGGCATGTTTCACCTATAAAGCAAACCCTGTATCCTACAGCCCAAAACTAACTATCCGCTACGCATTTGAGGGTGAGGCAGATCGCAGGAAGCAAGGGCTTCCCTCCAGGATCCTCTTCCTCAACAAGTCTCACACCGACCAGGACTTCCAATCGACCGGAACTCTGGACCTCCGGGGACAAAACAAAAGAGCTTGCACCAAGACAAAAGTCAAACTGCAGGATAACATTAGGGACAAGCTGCGTGGTATTCCCATTGAGGTGTCGTTGGGAATCCAGGGTACCAAGCGGCAGAAGAGGCAGAACGCTCTCCCCCAGCTTGTACCTATTCTTGACAACTCCCAGCCAAGCAAGGTCGTCACTGAGGTGAACTTCTTAAAGGAGGGATGCGGAAACGATAATATTTGCCAGAGTAGCTTACAACTGGAGTACAGATTCTGCTCCAAAGAGCTCAACCAAGATATATTTCCCCCATTACCTATGGAGAATGGGCTACCAGTGATCTCCCTCAGTGATCAGAAGGACATAGCTCTGGAGGTGACAGTGAAGAACAGAAATGGGGATGATGCTCATGAGGCTAAACTGGTGGGGATGTTCCCCAACGCTCTCTCATACTCCGGTTTCCGCTCTCAGAAAATGACAAGGGATAAACCGGTTCTCTGTTTAGCCAACCAGAATGGCTCCCAAACAGAGTGTGAACTGGGGAATCCATTCAAAAGAGATTCAGAGGTTACTTTCTACATAATCTTGAGCACTGCTGGTATCTCTCTCAATACGGCAGAAATTAATATTGACCTCGAGCTTCAAACGACCAGTACACAGGACAAAATGGGAAGAGTGAAAGCAAAGGCGAAAGTCGTGATTGAGCTGTTACTTTCTGTTGCAGGAGTTGCGAGACCCTCCCAGGTGTATTTTGGGGGTGATGTGAAAGGAGAGAGTGCCATCAACACAGAAGAGGAGATCGGCGGTTTGATTGATTATGAATTTAAGATAATCAATTTGGGTAAGCCGTTGAAGTCCTTTGGCACAGCCTCGTTGAACATCCAGTGGCCCAAAGAGAATGTGGATGGGAAATGGCTGTTATATCTGGTTAAGATCAGCAGTACTGGCCTGGAAGAGATCCCCTGCTCCCCAGAGACTGAGATCAACTCTCTCAAACACATTCAGTCCAGCACATCTAGGAAAAAGCGTGAAGTTGGAGGCAAAAAATCTGGAAGCAAAATTACTTTATTGGACCAAAAAAAGCACAAGATTTTGATGTGTGGCAATGGCTATGACGCTAGATGTGTGGTGATCAAGTGCCCTCTACAGGGCTTGGACAGTAGTGCAGTGATTGCGCTGCGATGCCGTCTGTGGAACGCTACCTTCCTTGAGAATTATGCCAATTTGAACTATCTTGATATAATTGTGAAAGCATCCATCAGCCTTGATGCTCCTGCAAAGAATATGGTTCTCAGGAATGCTGAGACTCAGGTGAGAGTCACGGTGTTTCCAGAGAAGGCAGTAACCCAGTATGGTGGAGTTCCCTGGTGGATCATCCTCGTGGCTGTCCTGGCTGGTATTCTGATGTTGGCATTGCTAGTGTTTCTACTCTGGAAGTGTGGTTTCTTCAAGAGAGCCCCACAAGACCAGTACGATGCAGCGTATCACAAGGCTCAGATCCATGTTCAGGCCTCTGATAAAGAGAAACTCACTACTGAGGCATAGTGCCCGTTCTCTGCGCTCAGACCTGGGTGTGGATTTTTCAAACGTTCTGAACACGAGGACAGCGTTCCAATATACCATGCTGTACGGATAAGGAAAGAGGCTCGTCAGTTCAAAGACAGGAAAGCCAAGCTGCATTCCTTTGAGAAAAAGCAGTGGGTGACAAGCTGGAATGAGAATGAGAACTACTCATAAGACACTTGACTGTTGGGATGCTGTCAGAGACAAGAATCTCCCATTTTTTTCTAAACATCCCAGTGTCACGAACCCATTGATCttagttatttatttttgtaaagtCTAAACTCAATTGACTGCATTTGTGAAGCAAACTCCAAAAATGTGTCCTATCCTGTGTCCTATCCTGAGGAAATGAGAAGCATCATATCTTACAATTCATTTTCTCTGAATTGGGACTTTTTAAACGAATTATCTGccattgatacatttttttttttttagcataaACAGTTTCAATCCAATGTTTACCTGAAGATAATCTTTTTTTTGCAGTCACTTTTGTCCAATCTAATGAACTGTATAGACTGGAACATtttgtatgtttgtatatatTTAAATACTTTAGCacactgtatatttattttagtcattatttgaaaaaaaaaaaaatgcattggccaaatacttaaaaaaaataaatctaaaCGTTACTTTTCAGTAAGGGCAAATGTTACTGATGATTTTCTAGTGCTACACAGACTAAAAAGTAGCTACAGGTATTAGGCAAATAATATTGTCATTGGGACTCATTTCTTTGCACTTGCTTTGATTATAAAAAAGGTAATTCAATACACGCTATTAGATATAAATCAGTTAAGAGTTTTGAGTTAGAACTATGATTCACACCATACCTTTGTTTATCCCCCTGTACTGGGATATGCTTCAGTTAACAGCAATGCAGCTGGGACAACTGGAGCCAACaagcaataaaatgctaattattgTTTAGCTAATTGTATTTGAAGGATGTGTGGGTCTTGAAGATGACACAAAATACGCACCAAAATGCAGATTTGAGAAACATTGTGATCTTGTTGATGAATAACCGGCATCGTTGTTCACTTGTGGTTATGGCCAGGTCCAGGGAATGGAGTTTGGACACTCCAAATTGGTTGTTCACACATAATAGGTTCACTGTGATAAGAGGTGCAACTAAACTATCATTGTTCGCATTTAAATCTAAATGTATGTTTTATGTGATTGAAAAATTTAGTAGCCCTAcctaaaaaaaaaggggggggggggggaattatgtAAATCACTGGCTATTCATTCCTCAATTCAGATGTTTTTAATACTGTGCAAATTGCAATAAATTGAGAAAT

Function

GO: NA

KEGG:

id description
K06485 ITGA6, CD49f; integrin alpha 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038348 lncRNA downstream 2104 14901334 ~ 14901540 (-) True G1780243
TU2038347 lncRNA downstream 5509 14897907 ~ 14898135 (-) True G1780242
TU2038145 lncRNA downstream 371596 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 480786 14422622 ~ 14422858 (-) True G1779997
TU2038086 lncRNA downstream 481766 14421497 ~ 14421878 (-) True G1779996
TU2038371 lncRNA upstream 5530 14939854 ~ 14940056 (-) True G1780264
TU2039003 lncRNA upstream 81831 15016155 ~ 15021609 (-) False LOC110501455
TU2039001 lncRNA upstream 103674 15037998 ~ 15043656 (-) False LOC110501455
TU2039002 lncRNA upstream 103674 15037998 ~ 15043656 (-) True LOC110501455
TU2039105 lncRNA upstream 221549 15155873 ~ 15156151 (-) True G1780892
XM_036958806.1 mRNA downstream 62368 14793734 ~ 14841276 (-) True rapgef4a
XM_036958807.1 mRNA downstream 62369 14793734 ~ 14841275 (-) False rapgef4a
XM_036958809.1 mRNA downstream 70363 14793734 ~ 14833281 (-) False rapgef4a
XM_036958808.1 mRNA downstream 76866 14793734 ~ 14826778 (-) False rapgef4a
XR_005039048.1 mRNA downstream 81144 14822446 ~ 14822500 (-) True LOC118943730
XM_021579030.2 mRNA upstream 41014 14975338 ~ 14980745 (-) True LOC110501454
LOC110501455 mRNA upstream 83289 15017613 ~ 15043883 (-) False LOC110501455
XM_036958823.1 mRNA upstream 131421 15065745 ~ 15087917 (-) False LOC110501457
XM_021579035.2 mRNA upstream 131421 15065745 ~ 15088311 (-) False LOC110501457
XM_021579032.2 mRNA upstream 131421 15065745 ~ 15088313 (-) False LOC110501457
TU2036210 other downstream 1573149 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1730665 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 633179 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 751532 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2122798 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2122798 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2935205 17869529 ~ 17903951 (-) False G1783895

Expression Profile