RNA id: XM_021579030.2


Basic Information

Item Value
RNA id XM_021579030.2
length 4555
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110501454
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14975338 ~ 14980745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGCACATCGCAGACTAGATATTGCTCACCATAATGTTAGCGCTCGCATTTTCAAAACACATTTTTGCTTGTTCTGCTTCGAGTTCAATTATGCAATTAGGTTGATAATCACAGTGACGGAATTTAACTGCCTTTAATTTGTTATTCAGGTGGGTATTTTGAGCTGCCGGGGAACCGGCTAGTGGTGATTTTGGTTTCAGATCGTCTACAGCAGACGGACTCTATAACGTACATTGTACAATAAAATGAAGATTTGGATACTTGCTGCTTCTTCGTCACCCTCAATGAGTAGTACGCAATGGATATTGGGGATGTGCGTTCTTTTTCCTCACATGATTATCGATTAAGTAAGTGCAAATAATGCCTAATCGCTGTTAACTTAATCTCAGTGCTGATTGAAATGTGGAGCCCATTTATTCTTACTGTATAGCTACTGTCAACTCAACTGATCAACGTTCATACATGCCCTGTTATATGGATCAGCGTGGGTTTTTGACGGGGGTTTTTCTCTCCGGAAACTGAGCCAATAACAAAGGGAAACAGCCTACTCTTTAGTCAGTCGTCAGTTCAGTTAAATCAAACGTGCTCGGGAAAATCATTGTTCAACGTCTATGGTCTTAATGGAAAACTGTCCACACCCCCCATCAACCTGGCTGGGGATTAAATTAGTTGAAGGAGCTATGTTAAATGTTAGGTTTATTTACGATTAAATTAGCCTACATTATTATGTTACAGAGTAAATCAAAATGTTTAATTGAACTTGATGTGTTTTGAATTTCACGACAAAACATGATGCCGACGGATTTACCAACTGCTGCGGTAAATGGCGGCTGTTGGCTGTTTGGGCAAAATACTGTATAGAGGAGATGATATATAGGGCTGCATGACTCCATATTTAATACGGTATTATATCAACTATATAATTCCCATTAATGGCAACTGAGAGTGAATACTTTAGTTATTGTATTGTGAGAGCTGGGCAATAAATTGATCAGCCAAAGGTCACCCAATCCGTGTTCCAGCAAAGCTATtgcataatgtaggcctactccTAATGAAAATGTACTGGACAAGAATTTGGAAAAGGGTGACTTTAATTTGAAAATAAgtgaaaataaattaaatataatCCCACCATTGTCAAAACAAAACCTGTTAAAATATGACACTTATAAATAATGTCTTAACACTGCTGCCACATCAGCCTCAAATGAATGACACATTATGTTTCATTCGTTTTGTTTGATTACCCACACATTAATCATTTGGGGATTTGCTAGTTGTGTAGTGTTTTACATCGGTTGACAATCTAGCTAATTAGATACAAAAATGATTGTTTTGTAAGTTGATAACACACGTTCATGGTCATCATAATGTACCCCGCATCAAAAACGTTCAACACTAATGGTTGACTCAGGGCAAACATAACGGTTTGTTAAGTTAAAGGATTCCTGGAGGCATTTTGTTTTTGGTCATGAAATGATTGCACAATAAAATGCTATATGGAGAGATGTTGCATAGACAGCCCAATAGGAATCTGGTTTTACAAATATTAAGTTTAAGGTGTTAATTTTCACAACAATATATTTACGCATGTAACATAGGCTAGACTAGTCATTGCTTTAAATGCATAAATTCAACCAGGACTTCTTTGCTCAGATAATTGAGACCACGAGCTATTGCAAGTGTTAAATAAATGGCTAATTATGCGTATGAAAATTAAACATCAGTGTTATGCTAATTCAGCTCGCTTCAGCTGTGGCTCAGAGCACTTGAGACTGGCATATAATCAAACGGACCTGTAAGATATACATCTGTGCATGTGAACACCAAAAGACGCTGGCAATAATGAGCCAATCTATAACGATTTTTTTTAATGAGATATCGAAATAATATCTAATGCGAAATAAAACGTCGTTTTTCTGTTAAATAGTACGCCTCAAAGCTACACTTAAATGTGTTCATACTGCTATTTATGAACATTCATCTTTGTTGTTGTAGTGTGATTAATTTGGATGAAACAGTTCTTAGATAATAACACTATGCAGGCTGTTTCTTAATGTTTAAATGAACAGCAGGCCTATCAACATAACATGATCTATCCGTAGCCTATGTGTGATTGATCACAGAATAGGCTATTTCTTTACAattggattattattattattatcaaataGGCTAGATTTAATTGTGTGTTGTTTCTTTTAAAGCAGACATTTTTGATGTTAGTGTTTATTTTGCTTATACCTTTCCCTGCTACCTAAGCACTTAAAAAAATACATCTCAGACCTGAATCTGCAGGTCTTGTTGTTTTTCTTGAGTTTATCAGGTCCTTCGGACACAACCCCAGGATCGCCAATAGGCATCATTCTTGGATAGAGTGGACCAATCAGCGACCGCCTTTGATGAATATTCATGAATCCCTGATTCAAACCTTTGAGCGAGTTTGTCTAGACCACTGCATCATGCCTAGActtttcacagagacaaactacaTTTTCTTATGAATGGAAAGAGAAAAAATCAGTACAGCTTAAATTGGGATCCATCCTTCACTGAGATCatagaagaaaacaaaaaaggaagaggagagatccGCCAGAAGAGATGACAATGACTACAATACCAGAAAGTCTTAATAGCCCTGTCTCAGGAAAAACCGTTTTCATGGAATTTGGGCCACCGAGTCAACAAATGTCGCCTTCCTCAATGTCTCACGGACACTATTCCATGCACTGTTTACATTCTGCGGGTCATACGCAACACGAGAGCTCGTACAGTCCAGCCTCATCATTTCCTAGATCTTTAGGTTATCCATACGTTAACTCCGTCGGCAGCCATTCCTCAAGTCCATATCTCAGTACAGTGCAGTCGTACCAAAACAACTCGACACTAACACAGACACGGTTAGAAGATACAGCACAAGAGACAGAGAAGAACACAGTTGTAGAAGGCGGAGAGGTGCGGTTCAATGGGAAAGGGAAAAAGATTCGCAAACCAAGGACTATCTATTCCAGTTTGCAGCTACAGACTCTAAACAGACGATTTCAACAAACTCAATATTTGGCACTGCCAGAGAGAGCCGAGCTCGCAGCTTCGATGGGACTCACGCAAACACAGgtAAAGATTTGGTTTCAAAATAAGCGATCGAAGTTCAAGAAACTgatgaagcaaggtggtggcacgATAGACACGAACGCTTTAGCCCAGTTTAATGGTCACGGACCTACGACTGGATCTCCGGTAGCACCAGTTTGGAGCTCACCGACCACCGTGAAAACATCCGTGGGTGCACCAGGGTCTTACATTCCAAGTTATACCTCATGGTATCCAACTGCACACCAAGAGTCTATGCAGCAACCGCAACTCATGTGAACATAACTGTGAGCTGATAGACCTGTCCCGCCCTCTATACTGCCATGGCCCATATCAGGAGATTTTGGGTCAACAACCCAGCGTGGCCTTGCACTGGCCCGCTGTAGCCATGCACAGATGTAATCCGGAGTTTGCTCTCAAAGTTGCCAGATGACATATTGGCCTCTTCATACGACGGCACAGAGAATAGCCTGGgagccgagagactgaaaagggCACTGTCTGCGCCCAAGGGCAAGAAGTCCTGTCATGTCCACGACAGATACCGGAAATTGTTTTGACAAATGGGTCCTCAAGCTGCTGTTATTATCTTTTGTGAAATTTTAATAGGCTATGTGTTAGACGAAATATATTTTGCTGTAACAAGTCAGTGAGAGTATATTTATGTATACTATGTTTGATTTTAAGATTGGCTACGTTTCTTATCCCAATGATGATAAAAAAAATAGGCCTATGAAGCCGTGTATTTCCAAGGCCTATCAGATGTAGGCTAGGCCTCTACAGCTCCAACGAAGGTCAACATGGTGATTTGACCATGACCTTAAAACCTAGCCTTTAAACAGACAAACCCCCATTGGTCTATAATGTAACTTTGACCAACGAATGTAGGCCAATGCAatgaataatttaaaaaatagccTCATCATTTTTATCTGCATGGAATCGAATCTTCAGTCCGTTCCTTAGTTTTCACAGCCCGAGTTGCCCGCGCCCTTTGCGCATGCTACCATGCTGTCTTTGTATGTTAATTTAAGTTAAATTATTTCGTTTTTTTTCAATGTCTGTGTCTTTATTTAATATGCAGTGTGTTTGACTTATGAAACGACAACAACGTGTTGTTAATAACACGTTTAAATGATGATTGGCTGCTTGAGAAGAGCATTAACGTGATCCCGATGATAAAGATATGGTTTGTCATTGTTTGTTATGTGTTGAGCGGTTGGATGTACATAAGGACAATATAATAGGCATTTTTCAGCTTTGGTTTGTGCTGTAATCGATATGTTGTGTAAtaggatttattttttttaatttttttttacatgtgttCATTAAGATGAATGTGTTTAGCAATCTAGAAATATTTAGTTTTGTATTGATCACTTTAATTTATTGCTTTGTTTTATGGAagttgtgtacataatgttgaaaACAGTAAAGCTATGATTTAAAAGGCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038371 lncRNA downstream 35282 14939854 ~ 14940056 (-) True G1780264
TU2038348 lncRNA downstream 73798 14901334 ~ 14901540 (-) True G1780243
TU2038347 lncRNA downstream 77203 14897907 ~ 14898135 (-) True G1780242
TU2038145 lncRNA downstream 443290 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 552480 14422622 ~ 14422858 (-) True G1779997
TU2039003 lncRNA upstream 35410 15016155 ~ 15021609 (-) False LOC110501455
TU2039001 lncRNA upstream 57253 15037998 ~ 15043656 (-) False LOC110501455
TU2039002 lncRNA upstream 57253 15037998 ~ 15043656 (-) True LOC110501455
TU2039105 lncRNA upstream 175128 15155873 ~ 15156151 (-) True G1780892
TU2039064 lncRNA upstream 181215 15161960 ~ 15163276 (-) True G1780855
XM_036958816.1 mRNA downstream 41014 14903644 ~ 14934324 (-) False LOC110501452
XM_036958817.1 mRNA downstream 41014 14903644 ~ 14934324 (-) False LOC110501452
XM_036958818.1 mRNA downstream 41014 14903644 ~ 14934324 (-) False LOC110501452
XM_036958819.1 mRNA downstream 41014 14903644 ~ 14934324 (-) True LOC110501452
XM_036958806.1 mRNA downstream 134062 14793734 ~ 14841276 (-) True rapgef4a
LOC110501455 mRNA upstream 36868 15017613 ~ 15043883 (-) False LOC110501455
XM_036958823.1 mRNA upstream 85000 15065745 ~ 15087917 (-) False LOC110501457
XM_021579035.2 mRNA upstream 85000 15065745 ~ 15088311 (-) False LOC110501457
XM_021579032.2 mRNA upstream 85000 15065745 ~ 15088313 (-) False LOC110501457
XM_021579034.2 mRNA upstream 85000 15065745 ~ 15088358 (-) False LOC110501457
TU2036210 other downstream 1644843 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1802359 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 586758 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 705111 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2076377 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2076377 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2888784 17869529 ~ 17903951 (-) False G1783895

Expression Profile