RNA id: LOC110501455


Basic Information

Item Value
RNA id LOC110501455
length 1992
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC110501455
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15016155 ~ 15043883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATAAAAATAACGAGATACACTTGCGcggaaaatagttttttttcttccatcGATTGGTGATGCGCAATAGTACGTGGTTAAACTGTAGCACACACTGGAAGGGTGACAAACAAAACGATGGAGAGCGAGCGATGAGAAAAGTTATGGATTTCTTCCGCATACATCAGATGCGGCGGAAACACGTGGACAAACAGGAAGTCTTCGTTGCGTATTTTCCTTGGGCCTTTGACAACAACAGAGATGCAACAGTGTACAGAAATGGCGGGAGTTGTTTATGGAAGACGATACGACCACTAGCTTTGGGACACATCGGGAGCCAGAGTATTGGTTGTGCATCGTTCTGGTGGTTCGCGAAGGAAGGGATGAACGCAATGGAGAAGAAGTTGGCAGAGTATAAGTGTGACACCAACGAAGCAATCTGTTTAAAACTAGTCCGTTTCGCAGAGGAGGTCGATAATGAAAGCACGACATTCCATCCAGAGTTCAGCCACCAGCTTTATGGTGATGATGAGGTGGCTTTTGGATACAAAGGCCTTCAGATTCAACTGTACTGCAGTGCTGGGAACCTGATCACCCTCTTCAAAGTTAAATGTTCAGCCAGAGTCACAGAAAACCTTGACTGCGTGGAGCCTGATGATGTTGAAGGGAAGATCCGGGAGATCATTCCCGCTGGGTTCAGCTGCAACACAGACGACTTCACCTCATTGTTGGAGAAAGAGGCCAACTTCAAATCCTTCGGTACCCTGCTTCACACATACCACGTCCACAATGTGGAGGAGGGTGAAGACTGTCCCTACCAGATTCACAAGGTGGACGTGTCGTGCCCTGGATTCCGAGACTACCATGAGCGCCTGCAGACCTTCCTCATGTGGTTCATTGAGACGGCCAGCTTTATCGACGTGGACGACGATCGTTGGGACTTCTTTCTCGTATTTGAGAAGTACAATAACGATGGGGAGACTCTCTTTCGCAACTGTTGGCTACATGACAGTTTATAATTACTATGTGTATCCAGACAAAACCCGACCACGTGTAAGCCAAATGCTGATCCTGCCGCCGTTCCAAGGAGAGGGTCATGGTGCCCAGCTGCTGGAGGTAGTGCACAGGTTCTACTGCAATCTGCCTAAAGTACAAGAcattacagCTGAAGACCCCTCAGAGAACTACGTGAAGCTGAGAGACTACGTTCTGGTCAAGCTCTGCCAAACGCTGCCGATCATTCGCCACAGACGAGCTTCCTCTGAGCTTCAATGACGACATGGCCACAGAGGCCAGGGAGAAGTTAAAGATTAACAAGAAACACGCAAGACGAGTGTATGAAATCCTCCGACTGAGGGTGACGGACATGAGCGTTGAGACGAAAGCAAGAGATTACCGTCTGGAAGTCAAAAAGAGGCTTTTTTCCCCGACCAAGAAGAACCAGCGGGAGCTGACCAAGATGATGAGGTGTCTGCGGCCAGAGGAGCTGGCATCCCACATCAGTCAGATGGACACGGCGCTGTAGCAGGAGGTGCTGGAGAAAAGCTACCAGGAGGTGCTAGCCGAGTACCGGAGAGTCATTGAAAGGCTAGCACAGGCCTGATCCAGGGGGCCTAACGTCGGCCCTGGCTACCCCCTGTAACAcaaacccccccaccaccaccaccctggccccatctccttctcctcttcccacTGATGGTCCtagatatacagtagaggttGAGCAGCGCTGTGcagctggctggctgcctggggAAGGCCCACTGTGTCCCATGTGTGTAATCACGCTGTGTGAGATTTAGTGATTGGTAATCATTCACAGGTGATAGGAACACCATCCATACGGTCTGGCTGTGCAGAACATGCCTCCTTTTGATATAGAGAATAACAGAGATGGTGgttctttttttccccctcaaataTCTGTCTAGGTTTTTCCTGAAGACGTGTAGGTTTTTAAGCACTTCGTACTGAAATAAAtgacatgtttttttgttgtacaTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038371 lncRNA downstream 77557 14939854 ~ 14940056 (-) True G1780264
TU2038348 lncRNA downstream 116073 14901334 ~ 14901540 (-) True G1780243
TU2038347 lncRNA downstream 119478 14897907 ~ 14898135 (-) True G1780242
TU2038145 lncRNA downstream 485565 14531052 ~ 14532048 (-) True G1780050
TU2038087 lncRNA downstream 594755 14422622 ~ 14422858 (-) True G1779997
TU2039105 lncRNA upstream 111990 15155873 ~ 15156151 (-) True G1780892
TU2039064 lncRNA upstream 118077 15161960 ~ 15163276 (-) True G1780855
TU2039120 lncRNA upstream 150143 15194026 ~ 15194281 (-) True G1780907
TU2039143 lncRNA upstream 168745 15212628 ~ 15212880 (-) True LOC118936393
TU2039148 lncRNA upstream 172751 15216634 ~ 15216871 (-) True G1780926
XM_021579030.2 mRNA downstream 36868 14975338 ~ 14980745 (-) True LOC110501454
XM_036958816.1 mRNA downstream 83289 14903644 ~ 14934324 (-) False LOC110501452
XM_036958817.1 mRNA downstream 83289 14903644 ~ 14934324 (-) False LOC110501452
XM_036958818.1 mRNA downstream 83289 14903644 ~ 14934324 (-) False LOC110501452
XM_036958819.1 mRNA downstream 83289 14903644 ~ 14934324 (-) True LOC110501452
XM_036958823.1 mRNA upstream 21862 15065745 ~ 15087917 (-) False LOC110501457
XM_021579035.2 mRNA upstream 21862 15065745 ~ 15088311 (-) False LOC110501457
XM_021579032.2 mRNA upstream 21862 15065745 ~ 15088313 (-) False LOC110501457
XM_021579034.2 mRNA upstream 21862 15065745 ~ 15088358 (-) False LOC110501457
XM_021579037.2 mRNA upstream 21862 15065745 ~ 15088358 (-) False LOC110501457
TU2036210 other downstream 1687118 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1844634 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 523620 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 641973 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2013239 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2013239 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2825646 17869529 ~ 17903951 (-) False G1783895

Expression Profile